| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4124 |
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| Symbol | |
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| ID | 4175913 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4958925 |
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| End bp | 4960172 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638057160 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_663677 |
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| Protein GI | 109900422 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.626146 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACAA AACACGCTTT TAAAAGTTGG CTACTTGGCG GGATCGCCAG CGTTGTGTTG
GTTGCTTGTG GCAACCCAGA CGAATCAAAC CAACCTGCGG CCCCAATTGC ACCGCAAGTG
AGTGTGGCCC AAGTCGTCAA TGAACGTATT ACCGAGTGGG ACGAATTCAC CGGTCGCTTA
CAAGCACCGC AAACGGTCAC CCTAATGCCA CGTGTATCTG GTTACATTGA AAACGTATTG
TTTGAAGAAG GTGCCGTTGT TGCCAAGGGT GACGTTTTAT TTCAAATCGA TGCACGCCCT
TTTAAAGCCG AAGTTGATCG CTTAAAAGCA GAATTACAAA GTGCAAAAAG CGCGGCGATT
CAAGCGCAAA ATGATTTCGA CCGCGCCAAA ACCCTTAGCG AACAACGCGC CGTTTCTATC
GAAATATTAG ATGGACGCTT AGCACGTAAA CAGCAAACTG CTGCCACGGT TGCCTCGGTA
TCTGCTGCAT TAGAACGCGC CGAGTTAGAT TTATCTTACA CCCAAGTCAC TGCGCCAATC
GCTGGCCGCG TGTCTTACGC ACTCATCACC GAAGGTAACT TTGTCAACGC AGGGCAAAGC
CAGCTTACGA GCTTGGTTTC AATGGACAAA ATGTACGCCT ACTTTGATGT AGACGAGCAA
ACTTACTTAA AGTACGCCCA ATTAGCAGAA TCAGGCCAAC GCTCTGATAC CCGCGATGCA
ACAGGTAATC CCGTTTACAT GGCACTTGCC AACGGTGCGA ACTTCTCTCA CACCGGCAAT
ATCGATTTTG TTGATAACGC CGTCAACCAG CAGACCGGTA CTATTCGTAT TCGCGCCACC
TTTGCCAATG ATGATCATTC TTTACTACCA GGCTTGTTCG CTCGGGTAAA ACTGACGGGT
AGCAATTCAT ATCAGGGAAT TTTGATCGAT GAAAAGGCCA TTGGTACCGA TCTCAATAGA
AAGTTTGTGC TACTCGTCAA CCAAGACAAC GTATTGGAAT ACCGCAACGT GGTATTGGGC
GAAAAAATCA ACGGTTTACG CATAGTGGTT GATGGCTTAT CGCCTGCAGA CACCATAGTC
GTCAACGGTT TACAGCGCGT TCGTCCCAGC ATGAAAATTC AACCGAAAAT CGTCGATATG
ACCTCACAAG AAGCCCTGAC TGCTTTACGT CAGCAACAGA AATTACTTGA CCAAACCAGC
AATGAATTGA CTGCTCAAGC AGACAATGAT TCAGCTGAAC GCGGTTAA
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| Protein sequence | MSTKHAFKSW LLGGIASVVL VACGNPDESN QPAAPIAPQV SVAQVVNERI TEWDEFTGRL
QAPQTVTLMP RVSGYIENVL FEEGAVVAKG DVLFQIDARP FKAEVDRLKA ELQSAKSAAI
QAQNDFDRAK TLSEQRAVSI EILDGRLARK QQTAATVASV SAALERAELD LSYTQVTAPI
AGRVSYALIT EGNFVNAGQS QLTSLVSMDK MYAYFDVDEQ TYLKYAQLAE SGQRSDTRDA
TGNPVYMALA NGANFSHTGN IDFVDNAVNQ QTGTIRIRAT FANDDHSLLP GLFARVKLTG
SNSYQGILID EKAIGTDLNR KFVLLVNQDN VLEYRNVVLG EKINGLRIVV DGLSPADTIV
VNGLQRVRPS MKIQPKIVDM TSQEALTALR QQQKLLDQTS NELTAQADND SAERG
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