| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4121 |
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| Symbol | |
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| ID | 4175910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4955299 |
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| End bp | 4956258 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638057157 |
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| Product | DeoR family transcriptional regulator |
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| Protein accession | YP_663674 |
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| Protein GI | 109900419 |
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| COG category | [K] Transcription |
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| COG ID | [COG2390] Transcriptional regulator, contains sigma factor-related N-terminal domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGTTAAGC TTTCCAACGC CGAAAACAGA CGATTAGATG ATGCCGCTCG CGCTGGCTGG
ATGTACTACG TTGCCGGAAA TACCCAAGAT GAAATAGCTA AAAAGCTAGG GGTATCACGT
CAATCGGCCC AGCGCATGGT TGCCTTATCC GTTAGCGAAA AGCTAGTCAA AGTCAGACTC
GATCACCCCA TTGCTAAGTG CATGGATTTA GCCGATAAAA TTGCCAGCCG CTTTGGTTTA
CAATCCTGCG AAGTGGTGCC GAGCGATCCT AGTGACCCCT CATCAACCGT GGGTTTAGCG
CAGGCAGGCG CGAACGAGAT TGAACGTCAC TTAAAATCTG AACAGCCAAA AACATTGGCC
ATGGGCACCG GGAGAGTGCT TCGAGCATGC GTTGATGAAT TAGCGCCTTT AAATTGTCCC
GACCATAGGG TTGTGGCGCT ATTGGGTAAT ATGGCGTCAG ATGGTTCTGC CTCCCCTTAT
GATGTAGTGG TTCGTATGGC TGAGCGAGTG AACGCCAAGC ATTATCCCAT GCCATTACCT
GTATTACCTG AAACCGTTAA AGCAAAAAAT CAGTTACATG CCATGCCGCA CATCGCGCAA
AACATGCAAC TGGCTCAACA GGCTGACGTA ACCTTTGTTG GCGTAGGCAA TTTAGGCGCG
AATTCACCGC TACATCTCGA TGGTTTTGTG ACCCCAAAGG AGTTAGATGA GTTGCAAGCG
GGCGGCGCTG TGGGTGAAAT GATCAGCTGG GTGTTTGATA AAAACGGCAA ATTACTCGAC
TGCGCTATCA ACCAACGTGT GGCGAGTACG CCGCTTATTG TCGGCTCTGA CAAATTAGTA
TTTGCGTTGG CAGCAGGGGA AGAAAAAGTA TACTCCATTT TAGGTGCGTT ACGCTCAAAG
CTAGTGAATT CGCTGATCAC TAACGAATAT ACCGCCGAGC GCTTACTCAG TATCGATTAA
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| Protein sequence | MVKLSNAENR RLDDAARAGW MYYVAGNTQD EIAKKLGVSR QSAQRMVALS VSEKLVKVRL
DHPIAKCMDL ADKIASRFGL QSCEVVPSDP SDPSSTVGLA QAGANEIERH LKSEQPKTLA
MGTGRVLRAC VDELAPLNCP DHRVVALLGN MASDGSASPY DVVVRMAERV NAKHYPMPLP
VLPETVKAKN QLHAMPHIAQ NMQLAQQADV TFVGVGNLGA NSPLHLDGFV TPKELDELQA
GGAVGEMISW VFDKNGKLLD CAINQRVAST PLIVGSDKLV FALAAGEEKV YSILGALRSK
LVNSLITNEY TAERLLSID
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