| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4120 |
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| Symbol | |
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| ID | 4175909 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4954583 |
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| End bp | 4955296 |
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| Gene Length | 714 bp |
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| Protein Length | 237 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638057156 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_663673 |
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| Protein GI | 109900418 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGTAA AACAAGCATT GCCCGAATTA TCTGACATAC AATTGGTTAT TTTCGATTGT
GATGGCGTAT TGATTGATAG TGAAGGGTTA AGTAAGCGCG AACTACTGAT TCTACTGAGC
AATCTAGGTG TGGATATCAC TGATCACTAC TTCGAAAGCC ATTTTCTTGG GCATAGTTTC
GAACACGTCA CGGCTAAAAT ATACCAAGAC TTTAATGTCG CTTTGCCTGT TACTTTTCGC
CCTGAATATC AAAAAGCATT GATCGCAGCA TTTACTGCCG AACTGCAACC GACGTCAGGC
TTAACAGGCA TACTTGATAC CCTAGCGGTA CCGCGCTGCA TTGCCACGAG TAGTTCACCA
ACTCGTGTGG GGCATGCCAT GTCAGTTACT GGGTTAGGTC GCTACTTTGC ACCGCATATT
TTCACAGCTT CACAAGTGGA AAACGGCAAA CCGGCGCCAG ACCTGTTCTT ATACGCTGCC
AATAAAATGG GTGTTGATGC CCAGCATTGC TTAGTGATTG AAGACTCACC CGCGGGTGTG
CAAGCAGCAA AAGCGGCTAA CATGCATGTG ATCCGGTTTG CTGGCGCCAG TCATATGGAG
CCTTGGCGCA GAGCGAAAGC TCCCCTGACC GACGATGTTA CCACCATTGC ACAGTGGCAG
GACCTTTACA CACTTGCTCC TGCATTAACT ACTCATAAAG AAATCGAGAG GTAA
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| Protein sequence | MDVKQALPEL SDIQLVIFDC DGVLIDSEGL SKRELLILLS NLGVDITDHY FESHFLGHSF
EHVTAKIYQD FNVALPVTFR PEYQKALIAA FTAELQPTSG LTGILDTLAV PRCIATSSSP
TRVGHAMSVT GLGRYFAPHI FTASQVENGK PAPDLFLYAA NKMGVDAQHC LVIEDSPAGV
QAAKAANMHV IRFAGASHME PWRRAKAPLT DDVTTIAQWQ DLYTLAPALT THKEIER
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