| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4103 |
|---|
| Symbol | |
|---|
| ID | 4175892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4934467 |
|---|
| End bp | 4936227 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638057139 |
|---|
| Product | methyltransferase type 12 |
|---|
| Protein accession | YP_663656 |
|---|
| Protein GI | 109900401 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCTAACG ATTATTACAA CGATAAAGTT CAAGAAATCG CGCCTCAATA TTTGTCGTTG
TCGTTTGACC AAGTGCATAA CAGTTGGGCG CACTACTTAC CCGCTATTTT AGATAAACCC
CATTCGACTA TTCTTGATGT TGGCGCAGGC GTAGGCCGAG ACGTGAGTCA TATCGCCAAT
TTGCTCGCTG AAAAAAACCA AAGTGATAAT CAGTGCCGTG TTTATGCTGT AGAGCCCGCA
TTAAAAATGC TGCAAGAAGG GCAAATCACA ACCCAAGGGC AAAATGTTCA TTGGCTGCAA
GACGCATTAC CCGCATTAGA TAAAACCACA CGTTTAGAAA TTAGCTTTGA CCTCATTTTA
CTCAGCGCCG TTTGGATGCA CATTCCCGTT ACTCAACGAA GTCGCTCACT ACGAAAACTA
GCCAATTTGC TTAAACCCGG CGGTAAAATA GTGATATCGC TGAAATTTGG TATGACAGCC
GAAGAGCAGC ATGAAAGGAA AATGTTCGAC GTCAGCGTAG AAGAGGTAGA GGCACTCGCA
CAAAGCCTAG GCTTGTTTTC AAAGCTCGAA TCGCAGAACA AAAAAGACCA ACTCGGTCGT
GAAGGTGTTT ACTGGCAAAC CCTTGTATTG CAAATGCCAG ACGATGGCAC AGGTGCCTTT
CCGTTTATCC GTCATGTGGC CATTAATGAC GGTAAATCTG CCACGCACAA ACTGGCATTG
TTAAGAGTCT TATTAAGAAT TGCCGATGGT CATGCAGGCG CGGTACTAAG GCGAGAACCT
TCTACAAACG GTGACAGAGT CATACTGCCA TTGGGCTTGG TGGCTTTGTA TTGGATACAC
CAATACAAAG ATTTAATCGA TCACTACGGG TTATTCCAAA CACCGAATAA AAGCCCCAAT
ATGGGGTTTA TAAAAGACAA CGGCTGGAGG CAACTGACTC ACAGAGCCGC CGCCGATTTT
CGTATTGGTA ACGTTTTTAT CGGTGCTGAC GCAAAAGCGT TATACCGAGC ACTTTCGGCC
AGTACGCAAA ATATAAGAGA CATGCCCGGT AAGTACATTA CCCTACCCAA CAGTGATACT
CGGGTGTTTG AAGTCGCCGC AAAAACCGTT AGAGCAAAAG ACAGTTTGTT CTTAGATTTA
GATTCTTTAT CTAAGTGGGG AGAGTTCTCA TTACCTGAAA CCACGTGGTT GGCACTTAGC
CGATATGCCT GCTGGATAGA GCCAGTTTTA GTCAGTGAAT GGGTAAAAAC CATGGCCGGC
TACCAAGGCA ACCAAGACTT CAGTTCGTCA GACAAGCAAC ACTTACTTTA CCAAGCTTTG
AAATGGGAAG AGCCAGTACG ATCAACCACA GACGTTCGCC AACGCTTCGA CGCCCTTGCC
AGCACCCAAC AAATGCAATG TGTATGGTCA GCGAAAACCT TGAAACGAAA ATATGACATT
GATCACAGCA TGCCTTTTTC ACGCTGGCCA AATAACGATT TATGGAACCT AGTGCCCAGC
GACAGCAAGG TTAATAATAA CAAGCGCGAC AAATTACCCT CGGAAAAAAC ACTCAGTGCC
GCCAAAGAGC GCATGCAACA CTGGTGGGCA TCAGCGTGGT TAAACGAAAA CGATTCTAAC
CAAAAACAGC GCTTTTTCGC CGAAGCCAAT ATCGCATTGC CCGGGCTCAG TGCACAAAAC
GATTCTATCG ATGATTTATT TGAAGCCCTA CTGCTACAAA GAGGCCGCTT AAAAGATATG
CAGCAATTGC GTGAGTGGTA G
|
|---|
| Protein sequence | MSNDYYNDKV QEIAPQYLSL SFDQVHNSWA HYLPAILDKP HSTILDVGAG VGRDVSHIAN
LLAEKNQSDN QCRVYAVEPA LKMLQEGQIT TQGQNVHWLQ DALPALDKTT RLEISFDLIL
LSAVWMHIPV TQRSRSLRKL ANLLKPGGKI VISLKFGMTA EEQHERKMFD VSVEEVEALA
QSLGLFSKLE SQNKKDQLGR EGVYWQTLVL QMPDDGTGAF PFIRHVAIND GKSATHKLAL
LRVLLRIADG HAGAVLRREP STNGDRVILP LGLVALYWIH QYKDLIDHYG LFQTPNKSPN
MGFIKDNGWR QLTHRAAADF RIGNVFIGAD AKALYRALSA STQNIRDMPG KYITLPNSDT
RVFEVAAKTV RAKDSLFLDL DSLSKWGEFS LPETTWLALS RYACWIEPVL VSEWVKTMAG
YQGNQDFSSS DKQHLLYQAL KWEEPVRSTT DVRQRFDALA STQQMQCVWS AKTLKRKYDI
DHSMPFSRWP NNDLWNLVPS DSKVNNNKRD KLPSEKTLSA AKERMQHWWA SAWLNENDSN
QKQRFFAEAN IALPGLSAQN DSIDDLFEAL LLQRGRLKDM QQLREW
|
|---|
| |