| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4100 |
|---|
| Symbol | |
|---|
| ID | 4175889 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4926595 |
|---|
| End bp | 4928490 |
|---|
| Gene Length | 1896 bp |
|---|
| Protein Length | 631 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638057136 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_663653 |
|---|
| Protein GI | 109900398 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGG GCCCGATTGG CAAGGTTAGT CGCAGCCAGA CGGTTACGAC CTATGGGCCG
GGTTCTCTCT ATGAATTACG TACCTTTAAA GGCGGCGCTA TCGCCAATTC GGTCATTGTG
GCTGGTACAC ACCTTTGGCC AGTGGATGAA ATGCAGGAAG TCTCCGAACC CACCCTAGCG
GCATCGTTAG GTGTTGATCG ATTTCTGATG CCTCCCTCTG CCGAAGACGA TGATAACCCT
GTGCCCGTGC CGGCTTACCG TTTTCCTGAA TGGTTGGAAT GCAATGAATG CCACCGCTTA
GGTCACGTCA ACATTCGCTT CGATGAAGAA ATCGACGCGC CTCCCAAGTG TAGTGCTAAT
GACTGTAATG GTTATGGCGT GCCAACTAGG TTGGTAGTCG CGTGTCACCC GGGAGATGGG
GATGCCAGTG GTAATTCACC CGGGCATATT GATGATTTTC CTTGGACTTG GTGGGCTCAT
TCACAGTCAG GAGAAACAAC ATGCAAGAGC CCCGAAATCT ATTTGGAGGC AAAGGGCAAG
AAAGCTGGCA TTTCAGGTTT GGTGGTTCAA TGCAAAGCGA AAGACTGTGG CGCTTCACGG
AGCCTAGAGG GCGTATTCAA TAAAGATGCC ATTGCGTGGA GCTGTAAAGG CTATCGCCCG
TGGTTGGGCT CTAGAAATGA TGATGGGACA TGTGAGCCTT GCGAAAGGCC TGTGCGGACA
TTGCTTCGAG GTGCATCCAA CATCTATTTC CCTGTTTCGG CATCGGCCAT TTCCATACCG
CCGCTATCAT CAAAATTGAT ACAGGAAATC GTTGTTAGGG GAAGGCCTAT TCTTAATTCC
CTCAAGCAGG ATCATGCCGA CGGTAAAGCC ATTGATCGAG AGATGTACAT CAATCTGTTC
CAAAACGGCA TTCCTGGTTT TCGCCGTTAT GAACGTGACC AGATTGGCAT GGCAATGGAT
ATCCTGCTAG AAAATGCAGC GGCAGGTGGT CAGAAGCTGA CCGAAGCCCA GCAGAAAGAC
CGTGAGAGGC AGGCGCTCAC TCATGACTCC GATGAAGACC AGTTAGAGGA TGATTTTGAA
AATAAAGTTG TCGAGGACTA CGACTTACAG AAAGCACATT TACTGAAGGA CTATCTGGAA
CTTCTCGCCA AAGTGCATCG CCTTAGAGAG GTTCGCGCCC TTCGAGGGTT CCAGCGAATA
GAGAGCTCAC CTGTTGCCGA CAGTTACAGT CAAGCCTGTG CGCCCTTATC AAAATTCCCT
GAAGACTGGC TCCCGGCTAT AGAAACCCGC GGTGAAGGTA TTTACTTTGA GCTCTCCAAA
GATCGCTTGG CAGAGTGGGA AACTGACGAA GCGGTACTAA CTCATATCGC CCCGTTGGTT
GCCAACTATC TACGCTACTG TGAAGACCGT GGAATCGAAG ACATTGATAT GGACTTAGTA
GCCCCCGGCT ACCTAATGAT CCACACCTTA TCTCATCTGT TAATCAAACA GCTCTCACTG
GAATGCGGTT ATTCCAGTGC ATCGATACGT GAGCGTCTGT TCTATGGCCG CAGTGAAGGT
GAGCAGTGGT GCGGCGTATT ATTGTATACC GCTTCGGGCA GCGCGGACGG TACTTTGGGT
GGCCTCGTAC GCCAGGGTGA GCCTGAGAAT CTCGACAAGA TGATGGCCTC ATCATTAGAA
AATGCCCGCT GGTGTTCCTC TGATCCCCTG TGTATTGAAA GTGCAGGGCA AGGCGTTGAT
GCGCTTAACT TGGCCGCCTG CCATGCCTGT TCTCTAGTGT CAGAAACCAG TTGTGAGCAA
CGTAACCTGT TACTCGATAG AGCTTTGCTG GTCGGTACAC CCGATAACCC AGAGATCGGT
TTCTTTCATG ACTACCTTCA CGGAGATAAT CATTAA
|
|---|
| Protein sequence | MKKGPIGKVS RSQTVTTYGP GSLYELRTFK GGAIANSVIV AGTHLWPVDE MQEVSEPTLA
ASLGVDRFLM PPSAEDDDNP VPVPAYRFPE WLECNECHRL GHVNIRFDEE IDAPPKCSAN
DCNGYGVPTR LVVACHPGDG DASGNSPGHI DDFPWTWWAH SQSGETTCKS PEIYLEAKGK
KAGISGLVVQ CKAKDCGASR SLEGVFNKDA IAWSCKGYRP WLGSRNDDGT CEPCERPVRT
LLRGASNIYF PVSASAISIP PLSSKLIQEI VVRGRPILNS LKQDHADGKA IDREMYINLF
QNGIPGFRRY ERDQIGMAMD ILLENAAAGG QKLTEAQQKD RERQALTHDS DEDQLEDDFE
NKVVEDYDLQ KAHLLKDYLE LLAKVHRLRE VRALRGFQRI ESSPVADSYS QACAPLSKFP
EDWLPAIETR GEGIYFELSK DRLAEWETDE AVLTHIAPLV ANYLRYCEDR GIEDIDMDLV
APGYLMIHTL SHLLIKQLSL ECGYSSASIR ERLFYGRSEG EQWCGVLLYT ASGSADGTLG
GLVRQGEPEN LDKMMASSLE NARWCSSDPL CIESAGQGVD ALNLAACHAC SLVSETSCEQ
RNLLLDRALL VGTPDNPEIG FFHDYLHGDN H
|
|---|
| |