| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4090 |
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| Symbol | |
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| ID | 4175879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4914379 |
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| End bp | 4915428 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638057126 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_663643 |
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| Protein GI | 109900388 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATTCA AAGCGCTCGG CGATTTCTCC TCTTTGATAA ATGACAAGCT TCAAAGCTGG
TTAGAACAAA CCATCGCACA CCTACCTAAT TTTGTGGTCG CGATTGTGAT CACCATAGTG
TTCTCAATAC TCGCCAGAGT ACTCAGTAAA ATGCTTAGGA AAGGTTTACA CCGAGCATTG
GAATCCCGGC AAATCGCCGA TCTACTTGCG TCGATATTTA AAGCCATTGT GATGTGTACG
GGCTTATTTA TTGCGCTGGA GTTTTTAGGT CTTTCCGGCA CAGTAACCTC ACTTCTAGCC
GGTGCAGGCA TTGTGGGCTT AGCCATCGGC TTTGCGTTCC AAGACATGAC AGAAAACCTG
ATTGCAGGTA TTGCAATGGG AATTAGAAAA CCCTTTGAAT TAGGCGATGT AGTGCAAGCA
GAGGGCGTGT TTGGCAACGT ACGCGCCATT AATTTGCGCA ACACCATCGT CGAAACCTTT
TTTGGCCAAA TCGAGGTTAT CCCTAACAAA ATCTTGTTTC GCAATATACT TACTAACTAC
TCCACGCTGG GTGTTCGCAG GCTAGAGATC CCGGTTGGCA TTTCTTATGG CGACGACCCC
GCAGCAGCGG CAAAACTGCT CACTGATAAA ATTAACGAAT GTGACTTCGT CATTAAAAAA
GAAGAAACCG CCGTTTACGT AGAGAGCTTT GGCGATAGCA GCATTAATAT GCTGGTGTGG
TTTTGGATAG ACTACCCAGG CGATACCGGT TTTATGGTGG CACGCCATGA GGCAGTTATT
TTGATCAAGA AAACCTTAGA AGAAGCCGAC TTCCTTATTC CCTTCCCTAT CCGTACTTTG
GATTTTGGTG CAAAAGGCGG TGAAAAACTC GATTCAATGC TGGCGAGTCA GCAGAATATG
ACCAAGGGCA ACGCTGCTAA CAAAGGTAAT GAAGGCAATG AAAACGGCGA AAGTACGCAG
ACAAATTCAA AGCAACAAAA CTTTGATAAA AACGCCTCTT CCAAAGCAGA TGCTCCATCC
GATAGTGACG GGCAAAGCGC GCAAAATTAA
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| Protein sequence | MEFKALGDFS SLINDKLQSW LEQTIAHLPN FVVAIVITIV FSILARVLSK MLRKGLHRAL
ESRQIADLLA SIFKAIVMCT GLFIALEFLG LSGTVTSLLA GAGIVGLAIG FAFQDMTENL
IAGIAMGIRK PFELGDVVQA EGVFGNVRAI NLRNTIVETF FGQIEVIPNK ILFRNILTNY
STLGVRRLEI PVGISYGDDP AAAAKLLTDK INECDFVIKK EETAVYVESF GDSSINMLVW
FWIDYPGDTG FMVARHEAVI LIKKTLEEAD FLIPFPIRTL DFGAKGGEKL DSMLASQQNM
TKGNAANKGN EGNENGESTQ TNSKQQNFDK NASSKADAPS DSDGQSAQN
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