Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_4076 |
Symbol | |
ID | 4175865 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4900127 |
End bp | 4901023 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638057112 |
Product | phage integrase |
Protein accession | YP_663629 |
Protein GI | 109900374 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4973] Site-specific recombinase XerC |
TIGRFAM ID | [TIGR02224] tyrosine recombinase XerC |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGAAC AGCCAAGTCT GCAACCCTTA CTCGGCAAGT ACTTTGATTA TCTTAAGTAC GAACGTAATC TGGCCGCTAA ATCCATTGAA AATTATCAGC GTCAACTCGC CAGCATCTGC CAAGCCCTCA CCATTACCGC ATGGCCAGAG CTAACGGTCG ATCATGTGCG CCAAGTGCTG AATCAGGCTC GTCGTCAAGG GTTGAGCCCA CGTAGTATCG CCCTTCGACT ATCTGCACTA CGTGGCTATT GCGCTTATCT GGTTGAGCTC GAAGTGTTAT CTAGTAACCC AGCCAAGGCG GTACAAGCGC CTAAACAAGG CAGTCCATTA CCTAAACAGC TTAATGTAGA TGAAATGCAT CAGCTGCTAG ACTTCGATGA TGACTCTCTC CTTGGGGTTC GAGATAAAGC CATGCTCGAG CTGACCTACA GCTGCGGCTT ACGTTTAGCT GAGCTGGCCG ATTTAAACCT GAAAAGCCTA CAAGACGACG GCCAATTAAG GGTCATTGGT AAAGGCAGTA AAGAGCGCAT ACTGCCCGTT GGTAAAACGG CGTTAAAATG CCTTGGCGAA TGGTTGAAAG TGCGCGGTGT TTTAGCTGAC GGTGATGAGC CGGCATTGTT TTTAAGTAAA CACAGAAGGC GTATCAGTCA TAGGCAAATT GCGAAACGGA TGCAGTTGTG GGCCAAGCAG CAGCATTTAG ATCAAGATAT CAACCCACAC AAATTACGCC ATTCATTCGC CACCCACATT TTAGAATCAA GCGGTGATTT ACGCGGAGTG CAAGAACTAC TCGGCCATGC GAATTTATCC ACTACGCAAG TGTATACTCA TCTGAACTTT CAGCATTTGG CTAGCGTATA CGATACAGCG CACCCCAGAG CCAAGCGTCG AAAATAG
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Protein sequence | MSEQPSLQPL LGKYFDYLKY ERNLAAKSIE NYQRQLASIC QALTITAWPE LTVDHVRQVL NQARRQGLSP RSIALRLSAL RGYCAYLVEL EVLSSNPAKA VQAPKQGSPL PKQLNVDEMH QLLDFDDDSL LGVRDKAMLE LTYSCGLRLA ELADLNLKSL QDDGQLRVIG KGSKERILPV GKTALKCLGE WLKVRGVLAD GDEPALFLSK HRRRISHRQI AKRMQLWAKQ QHLDQDINPH KLRHSFATHI LESSGDLRGV QELLGHANLS TTQVYTHLNF QHLASVYDTA HPRAKRRK
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