| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4065 |
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| Symbol | |
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| ID | 4175854 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4888127 |
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| End bp | 4891264 |
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| Gene Length | 3138 bp |
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| Protein Length | 1045 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638057101 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_663618 |
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| Protein GI | 109900363 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.212111 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATATC CTCAATCTTC TACTGTGCCT GATTGGCAAA ACCCCGAAGT ATTCGCCATT
AACAAAGAGC CAGCGCGTAG CTCATTTTAT GGCTTTTCAG ATGACCCACA GGGGTACGTA
GATTCGCCGT TTATGTCTCA AGACTATTTG AGTCTTAATG GTGAGTGGGA TTTTCATTGG
GTGAAGGCCC CAAACTTGCG ACCATTAGAC TTTTACACTC CTGAATTTGA CTCCAGTCAG
TGGGATAAAA TAGCCGTCCC GGGTAATTGG CAATTGTTGG GCTATGGTGC GGCGAACTAC
ATCAATACAG CAGTGGATTT CGCTAAGCAC CCGATTGCAG GTGATGTGCC TGAGGACAAT
AACCCAGTAG GCTCTTATCG GCGTCACTTT GCCTTGCCTG ATAATTGGCA AGATAAGCAC
GTTTTCGTCT ATTTAGGGGC AGTGAAATCG GCGTTTTATA TTTGGGTAAA TGGCCATAAA
GTCGGTTACT CACAAGATTC CAAAACCCCT GCAGAATTTG ATATTACCCA GTACGTGCAA
GCGGGTGATA ACGTGATTGC ACTGGAGGTG TACCGCTGGT CTGACGGCAC TTATCTAGAA
TTACAAGATA TGTGGCGTTT ATCGGGCATT GAGCGTGACG TGTATGTATA TAGTACACCT
AAGGTACGCA TACGCGACTT TCATGCTTTG AGCACCCTTG ATAACCAATA CCTGCATGGG
GAGTTTTCAT TAGCAGTCAA TATACATTCG CATGTAGGGG GCCAAGAAAG TGCGGGAAAA
GACTATCAGT TACAGGCGCG CTTATTTGAC TCTGATTTAA CTCCCGTTTT TGAGCAAACC
GTTACATTAG AGAATTGGGA GTCACAATGT ACTGACTTGC TTTTGACCGG TAAGATAAAA
AATGTGGCCA AGTGGAGCGC CGAAACACCG CACTTATATC AACTAAAACT GACCTTGCTT
AACGAAAAGC GTGAACCTTT GCAGTACATA TACTCCCGCG TTGGTTTTCG AACTAGTGAG
TTGAAAAATG GCAATGTGTT GATCAACGGT CAGCCCGTGC TATTCAAAGG GGTTAACCGC
CATGATCACG ACCCTGTTAC GGGACACGTG ATAAGTCGCG ATTCCATGCG CCGAGATATG
CAGCTGCTCA AGCAGTTTAA TATTAATGCG GTACGAACTT CTCATTACCC AAATGATCCT
TATTGGTATG CGCTGGCGGA CGAATATGGA ATGTATCTGG TGGATGAAGC CAATATTGAG
TCCCATGGCA TAGGCGCAGC GAACCAAGCG ATATCTTACG AGCCTAAAGA CCATATGGGT
AACATGCCTA ACTGGAAAGG CGCGTATCTT GATCGAGTCT CCAATATGTA CGAGCGAGAC
AAGAATCACC CGAGTATTGT TATTTGGTCA ATCGGTAATG AAACGGGCGA TGGGCCGAAT
ATGGAAGCGT TATATGATTG GCTGAAAACC AAAACCAGCA TGCCCGTGAT GTCAGAGCAA
GCCCAATTGC GTCGTCATAC AGATATGTAT AGCCAGATGT ATGCGCCCAT CCCTGTGCTT
GAGCACTACG CGGAGCTCGG CGAAACCCGC CCGCTCATTT TATGCGAGTA CGAGCACGCT
ATGGGTAACT CCATGGGCAA CTTAGCTGAT TATTGGCGGG TGATTGAGCA CTATCCTCTT
TTGCAAGGGG GATTCATATG GGATTGGGTA GACCAAACCT TTGCACTGAC GTCAGAAGAC
GGCACGCCGT ACTGGGGATA CGGTGGTGAC ATGGAAGAGC CGGGTATGTA TCACGATGGT
AACTTCAGTG CTAATGGGGT GATGGCGGCA GACAGAACTC CTAACCCTCA TGCATTTGAA
GTTCAAGCGG TTTATCAGCA CATGAATATT GAGCGGGTTG ATTTCGAAAA GCACACCATT
GCCGTTAGAA ATAAGCGCTA CTTTACTGAT TTATCTGACG TCTCGCTGCA TTGGCGCATC
GAGGAAAACG GCCATGTTGT CGAAAGTGGG GTGATTGAGG AATTGGAGAT TCCAGCACAA
TCCACTCGTG AGCTTTCTTT GAGTGTGGCT GTAAAACCAA CAGCGGGTGC TGAGTACTTC
GCTAACTTTG AGTTTGTTAG TCGGTTTGGC AGCGATATGA TCCCAGCTGG GTTTACTGTG
GCTCGCAGTC AAATCCCGTT GACGCATTTA TCTGAAGCTG TGCATAAATC ACAAGACATC
ACAAAAGAAG CTTGTGCAAA GCACGATATG TTCAGGGCTA ATGAAACTGA TGCCCAACTG
CAATGCAGCG GAGATGATTT CTCGATTGAA TTTGATTTAG CAACAGGGCT GTTATGTGCT
TACCAATTGC AAAACGAATC AATGTTGCTT GAAGCAATCC GCCCTGAATT TTGGCGAGCA
CCTACGGACA ATGACTTTGG TGAAGGCTTT CCTGAGAAAG CCAAAGATTG GCAGTACGGC
GGGCAACATA TCGAATTAAG CGCATTTAAT TGGCAATCAC TAAAGAATGA TCAAGGGCAA
ATTCAGGCTA TTGAGGTTTC CACAGAGCAC TATTTAACAG ACGTACAAAG CCGTTATTTA
AGCAAATACA CCATTGATGC TGATGGCTGT GTCACCTTTG ATATTTGGCT TTATGCTGCA
CCTCATCAAT TTCACAGTGC CTTGCCGCGA ATAGGAAGTT TGCTACAAAT GCCTAGCCAG
TTCGACCAAG TAAGTTGGTT TGGACGCGGC CCGCACGAAA ACTATTGGGA CCGCAAGACT
TCGGCTTTTG TAGGGCGCTA CGCTAAATCG GTTGATGAAT TGTATTTCCC TTATGTTCGG
CCCCAAGAAA ATGGTTATCG CAGTGATGTG CGTAGCGTGA CCTTCAGTAA TGACAATGGA
CTAGGTTTGA CCTTTGATGG ATTACCGCAA ATCGGTTTTG GCGCACAACG GTATGACGTG
CACGAATATG ATCAATTCGA CAAGCGCGGT TTGCACCCAC ATGAACTTAC AAAACACGAT
CGCCTGTTTA TCAATATTGA TTACAAACAG CGTGGTGTGG CAGGTACTGA TTCTTGGGGA
ACTGCGCCAT TGTTTAAATA CACTTTGCCA TGGCGTGATT ATCACTATGG ATTTATCATG
AAGCCGTGTC GAGCATAA
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| Protein sequence | MTYPQSSTVP DWQNPEVFAI NKEPARSSFY GFSDDPQGYV DSPFMSQDYL SLNGEWDFHW
VKAPNLRPLD FYTPEFDSSQ WDKIAVPGNW QLLGYGAANY INTAVDFAKH PIAGDVPEDN
NPVGSYRRHF ALPDNWQDKH VFVYLGAVKS AFYIWVNGHK VGYSQDSKTP AEFDITQYVQ
AGDNVIALEV YRWSDGTYLE LQDMWRLSGI ERDVYVYSTP KVRIRDFHAL STLDNQYLHG
EFSLAVNIHS HVGGQESAGK DYQLQARLFD SDLTPVFEQT VTLENWESQC TDLLLTGKIK
NVAKWSAETP HLYQLKLTLL NEKREPLQYI YSRVGFRTSE LKNGNVLING QPVLFKGVNR
HDHDPVTGHV ISRDSMRRDM QLLKQFNINA VRTSHYPNDP YWYALADEYG MYLVDEANIE
SHGIGAANQA ISYEPKDHMG NMPNWKGAYL DRVSNMYERD KNHPSIVIWS IGNETGDGPN
MEALYDWLKT KTSMPVMSEQ AQLRRHTDMY SQMYAPIPVL EHYAELGETR PLILCEYEHA
MGNSMGNLAD YWRVIEHYPL LQGGFIWDWV DQTFALTSED GTPYWGYGGD MEEPGMYHDG
NFSANGVMAA DRTPNPHAFE VQAVYQHMNI ERVDFEKHTI AVRNKRYFTD LSDVSLHWRI
EENGHVVESG VIEELEIPAQ STRELSLSVA VKPTAGAEYF ANFEFVSRFG SDMIPAGFTV
ARSQIPLTHL SEAVHKSQDI TKEACAKHDM FRANETDAQL QCSGDDFSIE FDLATGLLCA
YQLQNESMLL EAIRPEFWRA PTDNDFGEGF PEKAKDWQYG GQHIELSAFN WQSLKNDQGQ
IQAIEVSTEH YLTDVQSRYL SKYTIDADGC VTFDIWLYAA PHQFHSALPR IGSLLQMPSQ
FDQVSWFGRG PHENYWDRKT SAFVGRYAKS VDELYFPYVR PQENGYRSDV RSVTFSNDNG
LGLTFDGLPQ IGFGAQRYDV HEYDQFDKRG LHPHELTKHD RLFINIDYKQ RGVAGTDSWG
TAPLFKYTLP WRDYHYGFIM KPCRA
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