| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4051 |
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| Symbol | |
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| ID | 4175840 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4874473 |
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| End bp | 4875510 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638057087 |
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| Product | tRNA-dihydrouridine synthase A |
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| Protein accession | YP_663604 |
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| Protein GI | 109900349 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00742] tRNA dihydrouridine synthase A |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000175838 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAATAATC CGTCTGTACC CCTCAACCGC ACTATCTCTG TCGCACCAAT GCTTGATTGG
ACCGATAAGC ATTGTCGATA TTTTTTGCGT CAAATTTCCA AACATTCCCT GCTATATACA
GAGATGGTTA CCACGGGAGC TATTATCTTT GGTAAAGGGG ATTACCTTGC TTTCAACGAC
ACTGAGCACC CTGTTGCACT GCAGTTAGGT GGGTCTGATC CGGTGGATAT GGCGCGTTGT
GCCGTCCTGG CCCAAGAGCA GGGCTATGAC GAAGTCAATA TTAATGTTGG TTGTCCATCT
GATAGAGTAC AAAATGGACG TTTCGGCGCA TGCTTGATGG CAGAACCCGA AACCGTAGCG
GCTTGTATTC AGGCGATGCA AAAAGAAGTC GATATCCCTG TTACGGTGAA ATCCCGTATC
GGAATTGATG ATATGGACGA ATACAAAGAC TTAACCGATT TTATTCAGAT TGTTGCTGAT
GCTGGGTGCG ACATATTCAC GGTGCATGCT CGTAAAGCTT GGTTGAAAGG TCTCAGCCCA
AAAGAGAATC GTGATATTCC TCCTTTGATG TATGACCGCG TTTATGCGCT AAAAGAAGAG
TTTCCACAAT TAAACCTTAG TATCAATGGT GGAGTGAAAA CGCTGGATGA TGCAACCATG
CATCTAGAGA AGCTTGACGG TGTAATGATA GGGCGTGAGG TCTATAGTAA TCCTTATATT
CTGGCTGACG TGGACAAGCT TTTTTATCAA GATGACAGCC CAGTACCAAG CCGAGAAGAG
ATAGTACACG CTATGCTGCC TTATGTTGAA GCTCAGATGG CAAGTGGTGC GCGAGCATGG
AATATAGCTC GTCATATGTT GGGTTTATTT CAAGGTCAAC CTGGGGGGCG TATTTGGCGA
CGTTATTTGA GCCAGCATGG CACTGGGCAA AGTAAGAATG GTTTGCAGGT CGGCCCAGAA
CTACTTATTA ACGCATTGGC AGCGGTTGAA GAAGCGCGCG CCACCGCTAA AGCGTATCAA
GATAGTAGGG TTAGCTAA
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| Protein sequence | MNNPSVPLNR TISVAPMLDW TDKHCRYFLR QISKHSLLYT EMVTTGAIIF GKGDYLAFND
TEHPVALQLG GSDPVDMARC AVLAQEQGYD EVNINVGCPS DRVQNGRFGA CLMAEPETVA
ACIQAMQKEV DIPVTVKSRI GIDDMDEYKD LTDFIQIVAD AGCDIFTVHA RKAWLKGLSP
KENRDIPPLM YDRVYALKEE FPQLNLSING GVKTLDDATM HLEKLDGVMI GREVYSNPYI
LADVDKLFYQ DDSPVPSREE IVHAMLPYVE AQMASGARAW NIARHMLGLF QGQPGGRIWR
RYLSQHGTGQ SKNGLQVGPE LLINALAAVE EARATAKAYQ DSRVS
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