| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4046 |
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| Symbol | |
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| ID | 4175835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4869994 |
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| End bp | 4870689 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638057082 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_663599 |
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| Protein GI | 109900344 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACACA TACTTGTTAC TGGTGCGAGT CGTGGCCTTG GGTTATCAAT GGTTGAACAT
TTATTAGCGC AAGGGAATAT CGTATTTGGA TGCGCTCGTG GTGAGAGCAC TTTTTCACAC
AAAAATTATC ATCACTTTAA AGCGGACGTT TCGAGGGAAG AAGACGTCAG CAACTTATTT
ATTCAGATAA GAAAGTCATT TAAGTACATC GACGTGTTGA TTAATAACGC GGGAGTCGCA
CGAATGAACG CGTTCGCCCT GACTCCTGTT AAAAATATGC GCGAGACCAT AGACGTGAAT
TATGCGGGTA CTTTTATGTG CTGCCAAAAA GCAATCCGTC TACTTAGAAA ATCAGCAAAC
CCTCGTATCG TCAATATGAG TACCGTCGCA GTGCCGATGA ACCTAGAGGG AGAAGCGGCT
TATGCTGCGT CTAAAAGTGC GGTGGAATCC TTAACACGTG TACTCGCCAA AGAGCTAAGC
AGCTTCAATA TAACCTGCAA CGCAATCGGA CCTTCGCCAA TAGCCACAGA CTTAATACGC
GGCGTGGGTG AAGAAAAAAT AGCACGCTTA GTCAAGCAAC AAGCGATACA GAAAATGGCG
CAGCCGGAAG ATGTACTCAA CTTAATCGAC TTTTTCATCA AGCCACAGAG CAAAATGATT
ACAGGTCAGA TCATTTATCT AGGAGGGATA TCATGA
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| Protein sequence | MQHILVTGAS RGLGLSMVEH LLAQGNIVFG CARGESTFSH KNYHHFKADV SREEDVSNLF
IQIRKSFKYI DVLINNAGVA RMNAFALTPV KNMRETIDVN YAGTFMCCQK AIRLLRKSAN
PRIVNMSTVA VPMNLEGEAA YAASKSAVES LTRVLAKELS SFNITCNAIG PSPIATDLIR
GVGEEKIARL VKQQAIQKMA QPEDVLNLID FFIKPQSKMI TGQIIYLGGI S
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