Gene Patl_4044 details

Gene Information

• Locus tag: Patl_4044
• ID: 4175833
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: -
• Start bp: 4868685
• End bp: 4869344
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 638057080
• Product: phage shock protein A, PspA
• Protein accession: YP_663597
• Protein GI: 109900342
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription
• TIGRFAM ID: [TIGR02977] phage shock protein A

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGTTTAC TTTCAAGAAT GTCAGATATC GTGCAATCAA ACATTAATGC ATTATTGGAT 
AAGGCTGAAG ATCCGGAAAA AATGATTAAG CACCTCATTT TAGAGATGCA GGATACATTA 
GTTGAGGTAC GTTCCGTTGC CGCGACGGTG TTGGCTGATA GGAAGCAGAT TGAGCGTCGT 
ATCAGTAAAC TTGAAATTGA AAGTGCGAAT TGGCAGAACA AAGCGCAGAT CGCTTTACAA 
AAAGAGCGTG AAGATCTTGC CCGAGCAGCG CTAGGTGAAA AACAGCGAGT AGATCAGGCT 
TTAGATAGTC TGCACGAACA ACTAAACGAA GTTCAAGAGT CTATTAATAA ACTACAAAGT 
GATAGTAGCC AGTTAAATGA CAAGCTAATT GAAGCTAAAG CGAAACAAAA AACGTTACTG 
ATAAGACAAC GTACTCAAAG TTCACGCTTA AAGCTAAGAC ATTCAGATGC ATACAACAAA 
GTCGACACCG CTATCGTGAA GTTTGATCAA TACGAGCGCC GTATCGATGA CCTAGAAGCG 
CAAGTTGATG CCTTTGACTT GGTCAGTGAA ACAAAAAGCC TGAATGCTGA ATTAGCTGAA 
TTAGAAGCAA GCGAAGAAAT AGAAAAACAG CTTGCTGAGC TGCGAAAAAA AGTCGCATAA 

 

Protein sequence

MGLLSRMSDI VQSNINALLD KAEDPEKMIK HLILEMQDTL VEVRSVAATV LADRKQIERR 
ISKLEIESAN WQNKAQIALQ KEREDLARAA LGEKQRVDQA LDSLHEQLNE VQESINKLQS 
DSSQLNDKLI EAKAKQKTLL IRQRTQSSRL KLRHSDAYNK VDTAIVKFDQ YERRIDDLEA 
QVDAFDLVSE TKSLNAELAE LEASEEIEKQ LAELRKKVA