Gene Patl_4030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4030 
Symbol 
ID4175819 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp4853810 
End bp4854907 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content40% 
IMG OID638057066 
ProducttRNA (uracil-5-)-methyltransferase 
Protein accessionYP_663583 
Protein GI109900328 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR02143] tRNA (uracil-5-)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.718234 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGCCCAA CCGAAATTAA CCCTGCGGAC TATGAACAAC AACTCGCTCA AAAAGTTAAT 
AGCGTGCAAC AGGCTTTCAA AACATTTTCG ATGCCAGCAT TAGAGGCGTT TTCATCAGCA 
CCTCTGAATT ATAGGATGCG TGCGGAATTC AGGATGTGGC ACGACGGAGA TAACTTAGAT 
CATGTCATGT TTGACCAATC AACAAAGCAA AAGTATGCAG TAAATCAGTT TCCCCCTGCC 
AGTATCGTTA TCAATGAAGT GATGATGAAG TTATTGTCAT TAGTAAAAAA GAACGAAGTA 
TTACGTAGAA AGTTATTCCA AATCGATTAT CTGAGTACCC TAACCAATGA AATATTAGTC 
ACCTTGGTGT ATCACAAACC TTTGGAAGAT GAGTGGCTAA AAGAAGCAAA AGCATTGCGC 
GCATTGTTAA GAGATGAATT TAAAATCGAC ATAATTGGCC GCGCGAAAAA GCAAAAAGTG 
CTGTTAGACA AAGATTATGT GATAGAAACG CTACCAGTGA ATGACCGACT CTACACGTTT 
AAGCAAATTG AAAATAGCTT CACGCAACCA AATGCTGGGG TAAACAGCAA AATGCTTGAG 
TGGGCGTTAG ATGTTACTCA AGATTGCCAA GGCGATTTAC TCGAATTGTA TTGTGGTGCA 
GGGAATTTCA GTCTTCCTCT GGCACAAAAC TTTCGACAAG TATTAGCAAC CGAAATATCT 
AAATCTTCGG TTGCTGCTGC GCAAGATAAT ATCCGTTTAA ACAACATAGA AAACGTGACT 
ATCTTAAGGA TGTCGAGCGA AGAATTTGTG CAAGCACTAA ACAATGAACG CAGCTTTAGG 
CGTTTAGAAG GTATCAATTT GCAGGATTAC GATTGCCAAA CAGTCTTAGT GGATCCCCCA 
CGCTCTGGCC TTGATGACGA CACGCTAGAC ATGATCAAAG AGTATCAAAA CATTGTGTAT 
ATTTCGTGTA ATCCTGAGAC ACTCAATAAT AATTTGGCAG TATTGAGCGA AACACATAAT 
GTAGTTCGAT TTGCTCTTTT TGATCAATTT CCATATACAC ATCATGTGGA ATCAGGAGTT 
TACTTGCAAA AGCGCTAA
 
Protein sequence
MRPTEINPAD YEQQLAQKVN SVQQAFKTFS MPALEAFSSA PLNYRMRAEF RMWHDGDNLD 
HVMFDQSTKQ KYAVNQFPPA SIVINEVMMK LLSLVKKNEV LRRKLFQIDY LSTLTNEILV 
TLVYHKPLED EWLKEAKALR ALLRDEFKID IIGRAKKQKV LLDKDYVIET LPVNDRLYTF 
KQIENSFTQP NAGVNSKMLE WALDVTQDCQ GDLLELYCGA GNFSLPLAQN FRQVLATEIS 
KSSVAAAQDN IRLNNIENVT ILRMSSEEFV QALNNERSFR RLEGINLQDY DCQTVLVDPP 
RSGLDDDTLD MIKEYQNIVY ISCNPETLNN NLAVLSETHN VVRFALFDQF PYTHHVESGV 
YLQKR