Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_4007 |
Symbol | |
ID | 4175791 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4822489 |
End bp | 4823661 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638057039 |
Product | glycosyl transferase, group 1 |
Protein accession | YP_663561 |
Protein GI | 109900306 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0438] Glycosyltransferase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.308231 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAAGTAG TGGTGACTTG TGAGTTTCGT TTTTATCGAA CACCTGATCA AAAGGTTTGG ACGAGCAGCG CGTTTTTATA TCATTTTTGG CAGAGATACT TAGCTACGTT CAAAAAAGTG ATTGTAGTTG CACGTATTCA AAATGTTGAC GCTCCTCAGC AAAGTTGGCA CTTATCCAGT GGGCTTGACG TTACCTTTGT AGGGCTACCC TACTATGTAG GTTTTGCCGG GTTACTAAGA AACTTTCGCA AAATTCGAAT GACAATTAAC GCTGTTGTCA CCCCTCAAAG AGCTGTTATC TATCGAGTCC CCTCCCAGTC AGCAATGTTA GCGAGCTTTG GAACCGCTGC CAAACAAGGG TTTGCATTAG AAGTCGTTGG TGACCCTCTT GACGTATTCA ATGCTGGTAT AACAAACGGC CCATTAGACA AAATCTTAGG TTGGGTTAGC TACATTGGCC TCAGGTATAT GGCAAAAAAC TCACTTGCCG CTTGCTATGT GACGAAGGAA TACTTGCAAC GTCGCTACCC AGTATCAAAT GGTGCTCTGA GTGTTGGCTG TTCGGATATA GAATTACCAG CTGCTAGTTA TGTCACCCAA GCTAGGGTGT TTAATACTCC AGGAAAACAG TTAGTTTTCG TGGGTTCTTT TTCGCAAATG TACAAAGGGC CCGACCTTCT CATCCACGCT ATTTCGCATC TTAAAAAGCA GGGGCTGACC TATAACGTCA CTATGCTAGG TGGCGGGATT TTTTTGCAAG AAATGCAAGC TTTGGCGGAA AAGCTCGAAT GTAGCGAACT CATACATTTT GCCGGCGAAG TGGGGCATGC CGACGTTATT CAATATTTGG ATAATGCAGA TGCCTTTGTG ATGCCATCTC GCACTGAAGG CTTACCAAGA GCCTTAATTG AAGCAATGGC TCGTGGCTTG CCTTGCATCG CCTCAAATGT CGGTGGGATC CCCGAGTTAC TCGATAACGC CTCTTTGGTT GAAAATAACA ACTGGTCGCA ACTAGCTGAA AAGATTCAAA GATTACTATC ATCGCCAGAA TCAATGTCTC AAGCTTCTCA GCGGAATTTG GAACGTGCAA GACGTTATGA AATGGAATTA TTAGCTAAAA GACGGGGGGA CTTTTATCAA TCATATTTTG ATTTAAAGTC TAATTACTCA TGA
|
Protein sequence | MEVVVTCEFR FYRTPDQKVW TSSAFLYHFW QRYLATFKKV IVVARIQNVD APQQSWHLSS GLDVTFVGLP YYVGFAGLLR NFRKIRMTIN AVVTPQRAVI YRVPSQSAML ASFGTAAKQG FALEVVGDPL DVFNAGITNG PLDKILGWVS YIGLRYMAKN SLAACYVTKE YLQRRYPVSN GALSVGCSDI ELPAASYVTQ ARVFNTPGKQ LVFVGSFSQM YKGPDLLIHA ISHLKKQGLT YNVTMLGGGI FLQEMQALAE KLECSELIHF AGEVGHADVI QYLDNADAFV MPSRTEGLPR ALIEAMARGL PCIASNVGGI PELLDNASLV ENNNWSQLAE KIQRLLSSPE SMSQASQRNL ERARRYEMEL LAKRRGDFYQ SYFDLKSNYS
|
| |