Gene Patl_4007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4007 
Symbol 
ID4175791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4822489 
End bp4823661 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content44% 
IMG OID638057039 
Productglycosyl transferase, group 1 
Protein accessionYP_663561 
Protein GI109900306 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0438] Glycosyltransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.308231 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGTAG TGGTGACTTG TGAGTTTCGT TTTTATCGAA CACCTGATCA AAAGGTTTGG 
ACGAGCAGCG CGTTTTTATA TCATTTTTGG CAGAGATACT TAGCTACGTT CAAAAAAGTG
ATTGTAGTTG CACGTATTCA AAATGTTGAC GCTCCTCAGC AAAGTTGGCA CTTATCCAGT
GGGCTTGACG TTACCTTTGT AGGGCTACCC TACTATGTAG GTTTTGCCGG GTTACTAAGA
AACTTTCGCA AAATTCGAAT GACAATTAAC GCTGTTGTCA CCCCTCAAAG AGCTGTTATC
TATCGAGTCC CCTCCCAGTC AGCAATGTTA GCGAGCTTTG GAACCGCTGC CAAACAAGGG
TTTGCATTAG AAGTCGTTGG TGACCCTCTT GACGTATTCA ATGCTGGTAT AACAAACGGC
CCATTAGACA AAATCTTAGG TTGGGTTAGC TACATTGGCC TCAGGTATAT GGCAAAAAAC
TCACTTGCCG CTTGCTATGT GACGAAGGAA TACTTGCAAC GTCGCTACCC AGTATCAAAT
GGTGCTCTGA GTGTTGGCTG TTCGGATATA GAATTACCAG CTGCTAGTTA TGTCACCCAA
GCTAGGGTGT TTAATACTCC AGGAAAACAG TTAGTTTTCG TGGGTTCTTT TTCGCAAATG
TACAAAGGGC CCGACCTTCT CATCCACGCT ATTTCGCATC TTAAAAAGCA GGGGCTGACC
TATAACGTCA CTATGCTAGG TGGCGGGATT TTTTTGCAAG AAATGCAAGC TTTGGCGGAA
AAGCTCGAAT GTAGCGAACT CATACATTTT GCCGGCGAAG TGGGGCATGC CGACGTTATT
CAATATTTGG ATAATGCAGA TGCCTTTGTG ATGCCATCTC GCACTGAAGG CTTACCAAGA
GCCTTAATTG AAGCAATGGC TCGTGGCTTG CCTTGCATCG CCTCAAATGT CGGTGGGATC
CCCGAGTTAC TCGATAACGC CTCTTTGGTT GAAAATAACA ACTGGTCGCA ACTAGCTGAA
AAGATTCAAA GATTACTATC ATCGCCAGAA TCAATGTCTC AAGCTTCTCA GCGGAATTTG
GAACGTGCAA GACGTTATGA AATGGAATTA TTAGCTAAAA GACGGGGGGA CTTTTATCAA
TCATATTTTG ATTTAAAGTC TAATTACTCA TGA
 
Protein sequence
MEVVVTCEFR FYRTPDQKVW TSSAFLYHFW QRYLATFKKV IVVARIQNVD APQQSWHLSS 
GLDVTFVGLP YYVGFAGLLR NFRKIRMTIN AVVTPQRAVI YRVPSQSAML ASFGTAAKQG
FALEVVGDPL DVFNAGITNG PLDKILGWVS YIGLRYMAKN SLAACYVTKE YLQRRYPVSN
GALSVGCSDI ELPAASYVTQ ARVFNTPGKQ LVFVGSFSQM YKGPDLLIHA ISHLKKQGLT
YNVTMLGGGI FLQEMQALAE KLECSELIHF AGEVGHADVI QYLDNADAFV MPSRTEGLPR
ALIEAMARGL PCIASNVGGI PELLDNASLV ENNNWSQLAE KIQRLLSSPE SMSQASQRNL
ERARRYEMEL LAKRRGDFYQ SYFDLKSNYS