Gene Patl_4005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_4005 
Symbol 
ID4175789 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4820695 
End bp4821315 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content46% 
IMG OID638057037 
Productsugar transferase 
Protein accessionYP_663559 
Protein GI109900304 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2148] Sugar transferases involved in lipopolysaccharide synthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTAAAC GATTGCTAGA TGTACTGCTG GTGTGCATGG CTTTACTGCT GCTTTGGCCT 
GTTATTCTGA CCATTGCTTT ACTCGTGCGT GTACTTTTAG GCGGTCCTGT GTTCTTTAGG
CAACCACGAC CCGGGCGCAA CGATCGTGTG TTCAATATGA TTAAATTTCG CAGCATGACC
AATGAAACCG ATGCGAATGG CCAATTGTTA CCCGATGAAG TCAGGTTAAC GTCGTTCGGA
CGATTTTTGC GCCGTAGCAG TTTAGATGAG CTCCCCGGAT TACTAAATGT ACTTCGTGGG
GACATGAGTT TGGTCGGCCC TCGGCCACTG CTCGTTGAAT ATTTACCGCT CTATAATGCA
GAGCAAAAGC GTCGCCATGA CGTGCGTCCA GGCATTACTG GTTGGGCACA GGTCAATGGG
CGTAATAATT TGTCTTGGGA AGATAAGTTC ACACTCGATG TGTGGTACGT GCAAAATCGC
AGTGTTGCAC TGGATATTAA AATTCTATTT TTAACCATTC TTAAGGTCTT ACAAAGGGCT
GATATAGAAC AAGATGGGCA CGTTACCATG GCCAAATTTA CTGGCTCTGG AAATACTAGG
GGCGAGCAAC ATGATCAATA A
 
Protein sequence
MLKRLLDVLL VCMALLLLWP VILTIALLVR VLLGGPVFFR QPRPGRNDRV FNMIKFRSMT 
NETDANGQLL PDEVRLTSFG RFLRRSSLDE LPGLLNVLRG DMSLVGPRPL LVEYLPLYNA
EQKRRHDVRP GITGWAQVNG RNNLSWEDKF TLDVWYVQNR SVALDIKILF LTILKVLQRA
DIEQDGHVTM AKFTGSGNTR GEQHDQ