Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_4005 |
Symbol | |
ID | 4175789 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4820695 |
End bp | 4821315 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638057037 |
Product | sugar transferase |
Protein accession | YP_663559 |
Protein GI | 109900304 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTAAAC GATTGCTAGA TGTACTGCTG GTGTGCATGG CTTTACTGCT GCTTTGGCCT GTTATTCTGA CCATTGCTTT ACTCGTGCGT GTACTTTTAG GCGGTCCTGT GTTCTTTAGG CAACCACGAC CCGGGCGCAA CGATCGTGTG TTCAATATGA TTAAATTTCG CAGCATGACC AATGAAACCG ATGCGAATGG CCAATTGTTA CCCGATGAAG TCAGGTTAAC GTCGTTCGGA CGATTTTTGC GCCGTAGCAG TTTAGATGAG CTCCCCGGAT TACTAAATGT ACTTCGTGGG GACATGAGTT TGGTCGGCCC TCGGCCACTG CTCGTTGAAT ATTTACCGCT CTATAATGCA GAGCAAAAGC GTCGCCATGA CGTGCGTCCA GGCATTACTG GTTGGGCACA GGTCAATGGG CGTAATAATT TGTCTTGGGA AGATAAGTTC ACACTCGATG TGTGGTACGT GCAAAATCGC AGTGTTGCAC TGGATATTAA AATTCTATTT TTAACCATTC TTAAGGTCTT ACAAAGGGCT GATATAGAAC AAGATGGGCA CGTTACCATG GCCAAATTTA CTGGCTCTGG AAATACTAGG GGCGAGCAAC ATGATCAATA A
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Protein sequence | MLKRLLDVLL VCMALLLLWP VILTIALLVR VLLGGPVFFR QPRPGRNDRV FNMIKFRSMT NETDANGQLL PDEVRLTSFG RFLRRSSLDE LPGLLNVLRG DMSLVGPRPL LVEYLPLYNA EQKRRHDVRP GITGWAQVNG RNNLSWEDKF TLDVWYVQNR SVALDIKILF LTILKVLQRA DIEQDGHVTM AKFTGSGNTR GEQHDQ
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