| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4004 |
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| Symbol | |
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| ID | 4175788 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4820070 |
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| End bp | 4820705 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638057036 |
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| Product | pilin glycosylation protein |
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| Protein accession | YP_663558 |
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| Protein GI | 109900303 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0663] Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily |
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| TIGRFAM ID | [TIGR03570] sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATCAATA AACTCATTAT TATAGGAGCA AGCGGTCATG GCAAAGTCGC GGCGGACTGC
GCTGAAGTGA GCCGCCGATT TAGCGATATC CGCTTTTTAG ATCAAGCCTA CCCGCAGCAG
CAAGCGAATG CCCACTGGAA CGTGGTAGGG CATGCGGATG ACGCTGCGAA ATATGTGGCA
AGCGATACGT TATTTTTTGT GGCTATTGGC AATAATGCCA TCCGTGCGAA AGTAACGGCC
GAATTACTAG CGCAGCATTG CTCCTTTGCA ACGCTGGTAC ACCCAAGTGC GCACGTCAGC
CGGCACAGTG AAATTGGCTT GGGTTCGCTT ATTTGCGCCA ATGCGACAGT CAATATCGCC
AGTAAAGTAG GTCAAGGGTG CATTATTAAT ACAGCGGCCA GTATTGACCA CGACTGCGCG
TTAGGCGACT TCGTGCATGT TGCCCCTGGC TCACGGCTGG CGGGCAATGT GACTGTAGAT
GAGCAAAGTT TTATCGGCAT CGGTAGTGCT GTTATTCAAG GTTGCACTAT TGGCCAACGC
AGTATAGTGG GAGCCGGCTC CACTGTGCTT TCAAATGTTT CTGACCACAC GGTTGTAGCT
GGTAGTCCAG CTAAGAAAAT TAATAATAAT AATTAA
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| Protein sequence | MINKLIIIGA SGHGKVAADC AEVSRRFSDI RFLDQAYPQQ QANAHWNVVG HADDAAKYVA
SDTLFFVAIG NNAIRAKVTA ELLAQHCSFA TLVHPSAHVS RHSEIGLGSL ICANATVNIA
SKVGQGCIIN TAASIDHDCA LGDFVHVAPG SRLAGNVTVD EQSFIGIGSA VIQGCTIGQR
SIVGAGSTVL SNVSDHTVVA GSPAKKINNN N
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