| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4003 |
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| Symbol | |
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| ID | 4175787 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4818864 |
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| End bp | 4820042 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638057035 |
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| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
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| Protein accession | YP_663557 |
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| Protein GI | 109900302 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAAACG GACCTTTTTC CCCTTGGCCG AACTACGATG AAGCTGAGAA GTCAGCGGTG
TTGTCAGTCC TTGACTCTAA TAAGGTAAAT TACTGGACGG GGCAGCAGTG CAGAGAATTT
GAGAACGCAT TTGCGCATTA TACTCATTGT GAATATGCGG TCGCAGTGGC AAATGGGACC
GTCGCATTAG ATTTAGCATG GCAGGCGCTG GATATGCCAA AAGGCAGCGA AGTCATTGTT
ACCTCACGCA CGTTTATTGC GTCTATTTCA TCCATTGTTT TGGCCGGTTT AGTGCCTGTT
TTTGCAGATA TAGAGCTTGA CTCTCAAAAT ATCAGCGCCG AGACCATACG TCAGAAAATT
ACTCGCAACA CCAAAGCTAT TCTGTGTGTA CATCTGGCTG GTTGGCCTTG CGAAATGGAC
GATATTTTAG CCTTAGCGAA TGAGCATGAC CTCTATGTGG TAGAAGACTG CGCGCAAGCG
CACGGCGCGA CCTACAAAGG CAAGCCGGTA GGCAGTATCG GTGATATCGG CGCGTGGTCT
TTTTGTCAGG ATAAAATCAT GACGACGGCC GGCGAAGGTG GCATGGTAAC GACCAACAAT
AAGTCACTCT GGGAAAAAGT CTGGGCATTT AAAGATCATG GTAAATCTTG GTCAGCGGTA
TATGAAAAAG AGCATCAACC TGGCTTTCGT TGGTTACATG AAAGCTTTGG TACTAACTGG
CGAATGACTG AAATTCAGGG GGCTGTTGGC TTACAACAAC TGAAAAAAAT GCCAACTTGG
ATGCAGCAGC GCCAAGCGTA CGCTAAACAA ATTTTTGCAA CCGCCGGAAA GTCTGATGCC
TTGTATGTTC CGCAAATTCC CGCGTACATC GAACACGCGT TTTATAAGTG CTATGTGTAC
GTGCGCCCTG AAAGTCTCAA ACCCGAGTGG AGCCGTGATC GTATTATCGA TGCAATTAAC
AAGCTCAATG TGCCGTGTTT CTCCGGCTCC TGCTCAGAAG TTTATCTAGA AAAGGCCTTT
GATGATTCAG GCTATCGCCC AGCACAGCCT TTAGTCAATG CAGTCACTTT GGGCCAGAAC
TCGTTAATGT TTCTAGTGCA TCCCACATTA ACCGACGATG AGATTTCGCG CACTTGCCAA
GCCATTGAGC AAGTGATGGA CGAGGCTGCC CAATCATGA
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| Protein sequence | MLNGPFSPWP NYDEAEKSAV LSVLDSNKVN YWTGQQCREF ENAFAHYTHC EYAVAVANGT
VALDLAWQAL DMPKGSEVIV TSRTFIASIS SIVLAGLVPV FADIELDSQN ISAETIRQKI
TRNTKAILCV HLAGWPCEMD DILALANEHD LYVVEDCAQA HGATYKGKPV GSIGDIGAWS
FCQDKIMTTA GEGGMVTTNN KSLWEKVWAF KDHGKSWSAV YEKEHQPGFR WLHESFGTNW
RMTEIQGAVG LQQLKKMPTW MQQRQAYAKQ IFATAGKSDA LYVPQIPAYI EHAFYKCYVY
VRPESLKPEW SRDRIIDAIN KLNVPCFSGS CSEVYLEKAF DDSGYRPAQP LVNAVTLGQN
SLMFLVHPTL TDDEISRTCQ AIEQVMDEAA QS
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