| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4002 |
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| Symbol | |
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| ID | 4175786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4817020 |
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| End bp | 4818867 |
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| Gene Length | 1848 bp |
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| Protein Length | 615 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638057034 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_663556 |
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| Protein GI | 109900301 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTCG ATAGGCTGTT TTCACTGAGC TCTCGAGCTA AATTTTCACT GTCTGTTGGA
TGGGACTTAG GCGCATTGTT TGCAAGTATT TTGGTGGCAT ATTGGTTACG AATCGGTATC
GAAGACTGGC ATTTTGCTGC AAGTGAGTGG TTGGTCATCA TTTTGAATTG TATTTTCGCC
TTGAGTCTTA TGACGTTTTT CGGCCATTAT CAACAAATGG TACGTTACAT CGACTTACGC
GCGATTTACC TTATTTTTAT CGCGCTGAGT TTATCCGCCT TGTATTTATT TGCGGCGCGC
TATGCCTTTC AGGCTTTTGT TCCCACCACG GTACCTTTCA TCTATTTGAC CTTGGCGATG
TTCTTAATTG TCGCTCCACG GTTGCTGATA CAAACCACTG TTCAAACACA AAATTATAAA
ATTCGTGAAA AATGTATTAT CTTCGGCGCC TCTCAAGCAG GGCGCTCTTT AGCCCAAACG
CTGCGTACGG GTAATGATTT GTTGCCCGTT GCATTTGTCG ATGACAAGAA GCTTTTTCAA
GGGAAGCAGG TGATGGGGTT GCAGGTGTTT GCTCGAGAAG ATATCCCCGA GCTGGTTCGA
AAGTATGGCG TCAACAAGAT GTTGCTAGCC GTAAATAACT CATCCCATGG GCGCCGAAAA
GAGCTTATCG CCGAGTTAGA ACCCTTTGCC ATTGAGCTGT TGAGTATCCC AAATATTCAA
GATATTTTGT CGGGCAAACG AAAAATCGAT GAGCTGCGGG AAATCAAGAT TGAAGAACTG
CTGGGACGCG AGCCTGTGCC ACCGATCGTT GAGTTACTGG ATACCAATAT CCGTCGCAAG
CGGGTTATGG TGACGGGGGC TGGTGGGTCT ATTGGCAGTG AACTGTGCCG ACAAATCGCT
ATGTCTAACC CCGAGTCTTT AATATTATTT GAGTTATCAG AATTCAACTT ATACCAAATT
GAAGGTGAGC TTTCTAAGCT TTACCCTGAT ATTAAGATTG TTCCTATTTT GGCCAGTATT
CAAGACAACG AAATACTACG AAGCGCCATT GACGCCCATA AAATACAAAC TATCTACCAC
GCGGCAGCGT ATAAACATGT GCCTATGGTG GAGTCGAATC CTTTGGCTGG GCTGCGTAAC
AACGTATTTG GCACCGCGAA TGTAGCGCTA GCAGCCATAG AGTTTGATGT GGAAAAATTT
GTACTGATTT CAACGGACAA AGCGGTGCGC CCCACCAATG TAATGGGCGC CACTAAGCGC
TTTGCGGAAT TGATCGTACA AGGTATTGCC GATCTCGAGT CTTCCACTCA GTTCGCCATT
GTCAGATTCG GTAATGTCCT TGGCTCATCA GGCTCGGTTG TGCCCTTATT CACTCGGCAG
ATACAAGCAG GCGGTCCTAT CACCGTTACC CACCCGGATA TCATTCGCTT TTTTATGACC
ATTCCAGAAG CCGCTCAACT GGTGATCCAA GCTGGGGCAA TGGGAAAAAA AGGCGAAGTG
TTTGTGTTGG ATATGGGCGA CCCAGTGAAA ATAGTCGATT TAGCGCAAAA AATGGCGCAT
TTGATGGGAC ATACGTTGAA GACTGAAACG CAGCCAGATG GAAATATAGA GCTTAAATTT
TCCGGTTTAC GACCAGGTGA GAAGCTCTAT GAAGAATTAT TAATTGACGA TGCTGATACC
ACTACAAAGC ACCCCAGAAT TATGGGCGCC GATGAGAGTA AATTGCCTTT CGAGGAAGTA
GTGATGCTGC TAGACGAGTT GAATTATGAG TTGACCCAGC AAAATGAAGC TAAAGCGAAG
GAAATCTTAA TTGATGCGCC ACTTGCTTAT GCGCCAGCGG CGCATTAA
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| Protein sequence | MKLDRLFSLS SRAKFSLSVG WDLGALFASI LVAYWLRIGI EDWHFAASEW LVIILNCIFA
LSLMTFFGHY QQMVRYIDLR AIYLIFIALS LSALYLFAAR YAFQAFVPTT VPFIYLTLAM
FLIVAPRLLI QTTVQTQNYK IREKCIIFGA SQAGRSLAQT LRTGNDLLPV AFVDDKKLFQ
GKQVMGLQVF AREDIPELVR KYGVNKMLLA VNNSSHGRRK ELIAELEPFA IELLSIPNIQ
DILSGKRKID ELREIKIEEL LGREPVPPIV ELLDTNIRRK RVMVTGAGGS IGSELCRQIA
MSNPESLILF ELSEFNLYQI EGELSKLYPD IKIVPILASI QDNEILRSAI DAHKIQTIYH
AAAYKHVPMV ESNPLAGLRN NVFGTANVAL AAIEFDVEKF VLISTDKAVR PTNVMGATKR
FAELIVQGIA DLESSTQFAI VRFGNVLGSS GSVVPLFTRQ IQAGGPITVT HPDIIRFFMT
IPEAAQLVIQ AGAMGKKGEV FVLDMGDPVK IVDLAQKMAH LMGHTLKTET QPDGNIELKF
SGLRPGEKLY EELLIDDADT TTKHPRIMGA DESKLPFEEV VMLLDELNYE LTQQNEAKAK
EILIDAPLAY APAAH
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