| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_4000 |
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| Symbol | |
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| ID | 4175784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4814303 |
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| End bp | 4816429 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638057032 |
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| Product | protein-tyrosine kinase |
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| Protein accession | YP_663554 |
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| Protein GI | 109900299 |
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| COG category | [D] Cell cycle control, cell division, chromosome partitioning
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0489] ATPases involved in chromosome partitioning
[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | [TIGR01007] capsular exopolysaccharide family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.218918 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGCGA ATCGAGACTT TACCTTAAAG CAGGAACGTT CATTAGATAT CTTCGATATC
TTGACTTTCT TGTGGCGTAA AAAGTTTCGA ATCATCATCA CTGCTGGGCT GCTGGCATCG
TTAGGTGCTT ACTACGTCAT CCATCTACCA AAAATTTACG TTGCCAGCAG CATCCTGTTA
TTGAGCGCCA AAGACAGTGG ATTGACCTTA CCCTCAAGCC TATCTGCCAT TACCAGTGGT
GAAGACACTC GCCAAGATAC CTACATTGAA TTCATGCGCT CTCGCCAATT CGTGCAAACT
GTTGTGGATG ATTTAGCTCT GTACAATTTG CATGAATATC AACAGTCGAC CGACGGCGGC
TACGTCTCAG AGAAAGACTA TGCGACTACC AAGTTACTTA AACAATTCAG CGTTTCAAAA
CTAAGCAATA CTGATATGTT GAAGATCACG GTTGAGTCGT TAACACCCAG CAGTGCCGCT
GAGATTGCTA ATCACATAGG GCCGGCCTTT TTCGCTTATT ATGCGCTTAT TAATCGTCAA
AAAGCAGACT CGAAATCCCA ATGGTTAAAT GACCAATTAA ATGAGTTAAA AACCAGTTTA
AGTCAGTCAG AAGAAAGGCT ACTGACGTTC TTGCGCGATA ATGAATTGGT TGATGTAGAG
AGCCAGGTGG ACCTAGCAAA AAGTGAGATT GCAGGGCTTA TCTCTCAGAA AATTCATATT
GATAGAGCGG TCGCTGAATC ACAAGGCAGT ATGGTGCAAT TAGCGACTAT CTCGGGAGGG
CAACAAGATT ATTTGCAGAT ACCCGCTATT CAAAACAACG CTCTCATCCG TGATTTGCGT
ATTCGCCGAG GGCAACAGCA ATTACTCATG GAAGGGGTAA CGAAACGGTA TTTACACAAA
CACCCTAAAT ATATTGCCGC AAAAGCAGGA CTAGAGGCGA TTGATACTGA ATTTACTATG
CTGATAAACC AATTGGTTAA CGGTTTACGC AATAGCAATG AAACACTCAG AGCGCGGCAA
CGCGACATAC TCGCGCAAAT TCAAAAGACC AAAGAGCGCC ACGCCAATTT AGGTAAGCAT
TCCATGCAGA TATCTCGCAT GCAGCGTGAA ATCGAGTCAA CACAGCATTT ATATGAAATG
TTTCTGTCGC GCTTGCAAGA AACTGAAATT CTAAAAGATC TAGATGACGG CGATGACTTT
GCCATTGTCG ACTCCGCATC GGAGCCAACG TTTCCCGCTA AGCCAAAAGT GGTTATGGGT
ATCGCGCTGT CAGTTATATT TTCATGTGTA TTTAGTTTTG GCTTTTGGCT TATTTTGCAC
TTGATCAGTG ACAAATATAC ACGTTTCAAA AGTATGTTAT CTAACTTGGA TGTGCCCATT
TTGAGTATGG TGCCAAGAAT TAAGCAGACC AAAGCCAATA AAGGTAAACC ATTTGCACTG
TCAATGCATT CAGAGGGGGA GCGCAATTAT CAATATTTCG AAGCTATACG CTCATTACGT
ACTGGACTGC TGGTAAAAAA TAATCAGCAT AAAAATGCGG TTATTGCCGT AACAAGCATT
GGCGAGCGAG ACGGCAAAAG TGAAATATCG ACCAGCTTGG CTGATTCATT CAGCAGGATG
GAAAAAACCT TGTTAATTGA TGTGGACTTA CGAAAGCCTA AAATTGCTGA AATGTTTGAC
ATTGATGCTA ATTTACCGGG GCTCACCAGC TTTTTGGGGA ATAAAAGTAG CTTCAGCAAA
TGTATTCATG CCGTTCACAG TAGTCCATTG ATGTTAATGC CCAGTGGCCC TCTACCGCCA
GATCCATTAG CCTACATCTC TAAACCCCGA TTTGCGGCAT TTTTACGTAA ACTAAGAGGG
TATTATGAGC GCGTGGTAAT AGAAACGCCG CCAATTAACA CTGTCAGCGA TGCAATCGCT
GTCGGTAAGT TTGTCGATGG TGTCATTATT GTTTGTGACG CGGAAAGGAA TGAGGGGGCC
GATTTATTAT TAGCCTTGCA AAGAGTCCAC GAAGCCGAAT TGCCTTTACT AGGCGTGGTG
TTTAATCGAG TAAAAGACTT GCGTTCGAAC ATGAATAAGC GGCAAGGTCT TGTTAGCCGG
CTAAAACGTG CTTTTGGCAT ACGCTAG
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| Protein sequence | MDANRDFTLK QERSLDIFDI LTFLWRKKFR IIITAGLLAS LGAYYVIHLP KIYVASSILL
LSAKDSGLTL PSSLSAITSG EDTRQDTYIE FMRSRQFVQT VVDDLALYNL HEYQQSTDGG
YVSEKDYATT KLLKQFSVSK LSNTDMLKIT VESLTPSSAA EIANHIGPAF FAYYALINRQ
KADSKSQWLN DQLNELKTSL SQSEERLLTF LRDNELVDVE SQVDLAKSEI AGLISQKIHI
DRAVAESQGS MVQLATISGG QQDYLQIPAI QNNALIRDLR IRRGQQQLLM EGVTKRYLHK
HPKYIAAKAG LEAIDTEFTM LINQLVNGLR NSNETLRARQ RDILAQIQKT KERHANLGKH
SMQISRMQRE IESTQHLYEM FLSRLQETEI LKDLDDGDDF AIVDSASEPT FPAKPKVVMG
IALSVIFSCV FSFGFWLILH LISDKYTRFK SMLSNLDVPI LSMVPRIKQT KANKGKPFAL
SMHSEGERNY QYFEAIRSLR TGLLVKNNQH KNAVIAVTSI GERDGKSEIS TSLADSFSRM
EKTLLIDVDL RKPKIAEMFD IDANLPGLTS FLGNKSSFSK CIHAVHSSPL MLMPSGPLPP
DPLAYISKPR FAAFLRKLRG YYERVVIETP PINTVSDAIA VGKFVDGVII VCDAERNEGA
DLLLALQRVH EAELPLLGVV FNRVKDLRSN MNKRQGLVSR LKRAFGIR
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