| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3998 |
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| Symbol | |
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| ID | 4175782 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4812235 |
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| End bp | 4813221 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638057030 |
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| Product | biotin--acetyl-CoA-carboxylase ligase |
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| Protein accession | YP_663552 |
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| Protein GI | 109900297 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0340] Biotin-(acetyl-CoA carboxylase) ligase |
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| TIGRFAM ID | [TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region
[TIGR00122] BirA biotin operon repressor domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00153965 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGCAGG GCACGAGCAA ACAGTCAGAT ATCTTTCGTA ATCATATAGT CCAAGCATTG
GCAAATGGGC AGTTCTGCTC AGGGGAATTG TTGGGAGAGC AGCTTGGCAT ATCCAGAGCG
GCGGTATCTA AATATATAAA ATCTCTCACA GAACTTGGAT TAAACATTTT TAGCGTCACG
GGCAAAGGAT ATCGACTCGC GGAGCCAATA CAGTTGCTTG ATGAAGCGTT AATCAGCAAA
CATTGTGAGC ACTTTGTTCC TACTCAACTA ACGCTGTTAA ACGTGGTCGA CTCCACTAAT
CAATACCTAA AGGAGCGTAT TGGGTCCTTA CATAATGGTG ATGTGTGCTT GGCGGAAGCG
CAAACCGCAG GGAGGGGAAG ACGAGGTCGC ACTTGGGTTT CCCCTTATGG AGCGAGTTTG
TATTTATCGC AGTTTTGGCA GTTTGCTGGT GGTTATCAAT CGATTGGAGG TTTGAGCTTG
GCAGTCGGCG TGGCCATCAC TCAAGCATTA GAAACCGCAG GCTACCAAGA TGTGCAGTTG
AAATGGCCTA ACGATATTTA CGCCCAAGGC AAAAAATTAG CGGGGGTATT AATTGAAGTG
GAAGGGCAAA TGGGCAGCGC CTGTGATTGC ATCATCGGTG TTGGACTTAA TATGGCACTT
GATATGGGCA GTGAGCGCAT AGACCAACCT TGGATTGATT TAGCCACTCT AAACCCAGAC
GGCTTTGATC GTAATCGAGT CAGTGCGCTG CTATTAGATG AACTTACCCG CTGTGCTGAC
CTCTTTAGCC AAGCTGGGCT AGAGCCTTTC CTTGAAAAGT GGCGAAACAG AAACGTGTAC
CAGGATAAAC CCGTTTATTT GATAATCGGT AACAAAACCG TGCATGGCAT TTGTAAAGGT
ATTGATAAAA CCGGGGCACT TTTATTAGAG CAAGAAGACG GCATTCAAGC GTACAGTGGT
GGAGAAATAA GTGTCAGAGC AAGCTAA
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| Protein sequence | MKQGTSKQSD IFRNHIVQAL ANGQFCSGEL LGEQLGISRA AVSKYIKSLT ELGLNIFSVT
GKGYRLAEPI QLLDEALISK HCEHFVPTQL TLLNVVDSTN QYLKERIGSL HNGDVCLAEA
QTAGRGRRGR TWVSPYGASL YLSQFWQFAG GYQSIGGLSL AVGVAITQAL ETAGYQDVQL
KWPNDIYAQG KKLAGVLIEV EGQMGSACDC IIGVGLNMAL DMGSERIDQP WIDLATLNPD
GFDRNRVSAL LLDELTRCAD LFSQAGLEPF LEKWRNRNVY QDKPVYLIIG NKTVHGICKG
IDKTGALLLE QEDGIQAYSG GEISVRAS
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