| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3996 |
|---|
| Symbol | |
|---|
| ID | 4175776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4809741 |
|---|
| End bp | 4810925 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638057024 |
|---|
| Product | elongation factor Tu |
|---|
| Protein accession | YP_663550 |
|---|
| Protein GI | 109900295 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0050] GTPases - translation elongation factors |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000528557 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAG CAAAGTTTGA ACGCACTAAA CCGCATGTAA ACGTCGGTAC AATCGGCCAC
GTTGACCACG GTAAAACCAC TCTAACAGCA GCAATTACTA CTGTACTAGC AAAAACGTAC
GGTGGTGCAG CATCTGCATT CGATCAAATC GATAACGCTC CTGAAGAGCG CGAGCGTGGT
ATCACAATTT CAACGTCTCA CGTTGAATAC GATACGCCTA CTCGTCACTA CGCACACGTT
GACTGTCCTG GACACGCCGA TTATGTAAAA AACATGATCA CTGGTGCTGC TCAAATGGAT
GGCGCGATTC TAGTAGTAGC AGCGACCGAT GGTCCTATGC CACAAACACG TGAGCACATC
TTGTTAGGCC GTCAGGTTGG CGTACCTTTC ATGGTTGTTT TCATGAACAA ATGTGACATG
GTTGACGACG AAGAATTGTT AGAATTGGTA GAGATGGAAG TACGTGAATT GCTTTCAGAA
TACGAATTCC CTGGCGACGA CTTACCAGTA ATCCAAGGTT CAGCGCTTAA AGCCCTAGAA
GGCGAAGAGC AATGGGAAGC AAAAATCATT GAGCTTGCAG AAGCCCTTGA TAGCTACATC
CCAGAGCCAG AGCGTGACAT CGACAAGCCT TTCCTACTTC CAATTGAAGA TGTATTCTCA
ATTTCAGGTC GTGGTACGGT TGTAACAGGT CGTGTTGAGC GTGGTATCGT AAACACAGGT
GATGCAGTAG AAATCGTTGG TATGAAAGAT ACAACGACTT CAACGGTAAC TGGTGTTGAA
ATGTTCCGTA AATTGCTTGA CGAAGGTCGT GCTGGTGAGA ACATCGGTGC ATTGCTTCGT
GGTACTAAGC GTGAAGATGT TGAGCGTGGT CAAGTACTAG CTAAGCCTGG TTCAATCAAC
CCACACACTC AATTCGAAGC TGAAGTATAC GTACTAAGCA AAGACGAAGG TGGCCGTCAT
ACTCCATTCT TCAAAGGTTA CCGTCCACAG TTCTACTTCC GTACAACTGA CGTAACAGGT
GCTGTAGAGC TTCCTGAAGG CGTAGAAATG GTAATGCCTG GTGACAACTT GAAATTCGTA
GTTGAATTGA TTGCTCCTAT CGCGATGGAC GAAGGTTTAC GCTTCGCAAT CCGTGAAGGT
GGCCGCACAG TAGGTGCAGG CGTTGTTGCA AAAATCATTG CTTAA
|
|---|
| Protein sequence | MAKAKFERTK PHVNVGTIGH VDHGKTTLTA AITTVLAKTY GGAASAFDQI DNAPEERERG
ITISTSHVEY DTPTRHYAHV DCPGHADYVK NMITGAAQMD GAILVVAATD GPMPQTREHI
LLGRQVGVPF MVVFMNKCDM VDDEELLELV EMEVRELLSE YEFPGDDLPV IQGSALKALE
GEEQWEAKII ELAEALDSYI PEPERDIDKP FLLPIEDVFS ISGRGTVVTG RVERGIVNTG
DAVEIVGMKD TTTSTVTGVE MFRKLLDEGR AGENIGALLR GTKREDVERG QVLAKPGSIN
PHTQFEAEVY VLSKDEGGRH TPFFKGYRPQ FYFRTTDVTG AVELPEGVEM VMPGDNLKFV
VELIAPIAMD EGLRFAIREG GRTVGAGVVA KIIA
|
|---|
| |