| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3992 |
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| Symbol | |
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| ID | 4175772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4804247 |
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| End bp | 4806403 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638057020 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_663546 |
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| Protein GI | 109900291 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTAT CTCTTTTGAA AGCACTTGGA ATTATCGATT GTTGTATTTT TAAACGTATC
AACGCACAAC ATTTCGAAAC CGTTTACGCA GAAAATGCAT GGATAGATTT ACTGCTTCCA
GGTGCAAGAG ATAGCAAAGC ATTCACCACA CCTACTGACA GCCCCTTTTT AGACGATTTT
TTGATGCAAG CAGAAGAGTT TTGGGAGTAC GCTGATTATG GAAAAATTGA ATCAGGCATT
TGGAACGAAG AAATAGAAGA TAACGAGCTT AAGCTCAATG CCTACGCGAG CATGGACAAG
GGGGATTGCT ATATCGTAAT TCATAATGTA ATTGAGCAAT TTCAGCAGCG CCAACAAACA
CTTCAGTCAG CCCGTGAACT CCTCCTGTCA AATGATAAAA TTGTCGCCCA GCAAGAATAT
GTTCATCAAC GTTTGGATGA CATGCTGAAT CAATCTTCTG ATCTAAAAAG CATTCAGCAA
CCAATCAATG AAGTGATCGA AAAAACCGAT ATAGGGGTCG CAATATTATC ACCCAATTTG
CAACCTATAA GCCAAAACCC TGCTTTATAC AGTCTCTTTG ATACTCATAT AACGCAGCCA
GAAACCCAGC CTTATGAAAT TATTTTGCAG CTATTCGAGA AGCAATACCC CGAGTTTGAA
AGGGTCATTA GTACAGGCAG TCGCTGGAGC GGCGAGCTAT TTTGGTTAAA ACCACCGGGC
ACAGGCAAAT GGATTAAGTT ATCCATTTAC CCAGTAAAAG CCGACTTTCA ACAAATTACC
CACTGGGTGT TTATGCTGAG TGATATTTCT CAGGTGAAGC ATCTTCTGCA GAATAATGAG
AAGCTAACCT ATTATGATGC CCTGACCGAT ATTCCGAATC GCCAATATTT TTGGATGCAA
TTGGAGCAGT CAGTTAATAA TGCGATGCCT TTCTATGTCC TGTATTTGGA CATAAAAAAC
TTTAAGCGTA TTAATGAAAT TCACGGTCAC TCCCGAGGTG ACCAAATTAT TAAAGAATTG
GTTGAGCGCA TTACGCCGCA TATTAGCGAA GGTGACATGT TTGCCCGTAT CGGCGGAGGC
GAGTTTGCGA TTATTAGGCA AAAAACTGTT ACTGAACAGC AATGTATTGA TCTTGGTCAC
AAGCTGATTG ACGCCGCTGT TCAGCCTTTC TTTTTGCCTA ACGGAACACA TTGTGAAATC
GGTTTAAACA TTGGTGCTGC TAGCTTCCCC CGAGACGCTG ATGACGCTGA AACCTTGATG
AAGTTTGCTG ATCTTGCGGT TTTCAACGCT AAGAAAGCCT CTAAAAGCAG CGTTCAATTT
TATTCTCAAG AATTGAAAGA AGCCTCTCAG CGCATCATTG AATTAGAGAA CGCTTTGCAA
AGCGCCATCA CTAATCATGA GTTCGAGCTA TTTTTGCAAC CTATGTTGGA CCTAACAAGC
GGCACCATTC TAAAAGCAGA AGCATTGCTA CGCTGGAACC GTTTAGACGG CGAGCGCATC
GGGCCTGATG AGTTTATCCC GATTGCAGAG CAAACGGGTC TCATTGTGCC TATTGGTAAA
TGGGTGATCT CTCGGGCATG TGAAATGATA AGCACCCTAA ACCATAGGGG TTACAGCTGT
AAGTTATCCG TGAATTTGTC GCCTCGGCAA ATCAGCGATC GCCATTTATT AGAGTTTATT
CGAGGCTCGA TCCAGAACAG TCATATCCTG CCGAATCAAT TGGAGCTAGA GTTAACAGAA
GGTGTATTAG TTGATAATTA CGACAAGGTG CAGTACTTAC TGACCGAGGT AAGAAAACTC
GGTGTCAGCG TGTCGATAGA TGATTTTGGC ACTGGCTATA GTTCACTTTC CTATCTTAAA
AAGCTGCCTA TTGATCATAT AAAAATTGAT CGCTCATTCG TGCAGGATTT GGTTAGTGAC
GAAAACGACA AAGCCATTAT TTTAGCGATT ATCGCCATGG CCCATAGCTT GAAGTTGAAT
GTTATTGCCG AAGGTGTTGA AACTGAGCTG CAACGTAACT TTTTACAGCT CAATCACTGT
AATCTTGCCC AGGGCTATTT GTTCAGCCGC CCGTTACCCT TTGCCCAATT TTGTGAGTAC
CTAAGTGCCA GCCCTACGCA AAAGCTGATA ACCCCGTCTG CGCCCTTCCC AGAATAA
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| Protein sequence | MKLSLLKALG IIDCCIFKRI NAQHFETVYA ENAWIDLLLP GARDSKAFTT PTDSPFLDDF
LMQAEEFWEY ADYGKIESGI WNEEIEDNEL KLNAYASMDK GDCYIVIHNV IEQFQQRQQT
LQSARELLLS NDKIVAQQEY VHQRLDDMLN QSSDLKSIQQ PINEVIEKTD IGVAILSPNL
QPISQNPALY SLFDTHITQP ETQPYEIILQ LFEKQYPEFE RVISTGSRWS GELFWLKPPG
TGKWIKLSIY PVKADFQQIT HWVFMLSDIS QVKHLLQNNE KLTYYDALTD IPNRQYFWMQ
LEQSVNNAMP FYVLYLDIKN FKRINEIHGH SRGDQIIKEL VERITPHISE GDMFARIGGG
EFAIIRQKTV TEQQCIDLGH KLIDAAVQPF FLPNGTHCEI GLNIGAASFP RDADDAETLM
KFADLAVFNA KKASKSSVQF YSQELKEASQ RIIELENALQ SAITNHEFEL FLQPMLDLTS
GTILKAEALL RWNRLDGERI GPDEFIPIAE QTGLIVPIGK WVISRACEMI STLNHRGYSC
KLSVNLSPRQ ISDRHLLEFI RGSIQNSHIL PNQLELELTE GVLVDNYDKV QYLLTEVRKL
GVSVSIDDFG TGYSSLSYLK KLPIDHIKID RSFVQDLVSD ENDKAIILAI IAMAHSLKLN
VIAEGVETEL QRNFLQLNHC NLAQGYLFSR PLPFAQFCEY LSASPTQKLI TPSAPFPE
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