| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3985 |
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| Symbol | |
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| ID | 4175765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4795917 |
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| End bp | 4797812 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638057013 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_663539 |
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| Protein GI | 109900284 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0580929 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAACA TCATTAACAT CCTATGGGGA GTTTTATTCT TTCTTAGCTT TTCGGCGATT
GCTCAAGCAC AGCAGGTACT GTCTGTAGCG GTTTTGACCA CAAACGAACG TCAAAGTGAT
ATATACCGCG GGGCGTTTAA CGACTTTTCA ACCCAATCTA TTCAATACGA TGTCAAGGTA
ACCTTCTTTA GCGATAAAGA ATTCAAACGC TTATTACCTC GGTGGCTTGA AACGGGTGAA
TTCGACTTAC TTTATTGGCA GGCAGGAGAG CGCCTTCGCT CGCTGATTGC ACAAGATGTG
ATACAGCCAA TAGACTCTTT ACTGCCAAGG AAAGAGTTAC AAAGGTCTAT TCAACCCGCG
GTATTGCACA GTGTCACGCA GCAAAGCGTT TCCAATGAAG ACGCTGTAAC TTACGCGCTT
CCAATCGCAC AATACGGCTG GGGTTTTTAC TATAACAAAG CCGTTTTTCA GGAACTCAAC
GTAAAACCAC CCAATAACTG GGAAGAATTC ATAGCCCTTT GCCAGCGCAT AAAAGAGCAA
GGTGCAAATC CATTGGTCCA AGCAGTGCAA GAAGGCTGGC CCGCCCTTGC GTGGTTAGAT
TATTTGTCAT TAGACGCCGG CGGACTCGAA TTTCGTCAGC AAGTCATTGA TGGGCAAGCA
TTGGCAGGCC CAACGACAGA AACGTTTTTA AAACAATTTG AGCAGCTACT TTCAAAGGAA
TGGTTTTTTG CGCCGCAGCG TCACTGGACT TGGCAACAAG TAATGAAAGT AGTCGAAGCT
AAGCAAGCAG CAATGACATT AATGGGACAA TTTGCAGAAG GGACTATCGA CCCTTTGCGG
AACAAAGATA TCGGCTTTTT CTCGTTCCCT AAGGCTAATC AAATGAACCA AGCCGAGGTC
GCTCCGCTGG AGATATGGGT GGTGCCCCGC TCAGCTAAAA ACAAGGCTCA CTTGGCGCCA
TTGCTACGAT TTCTGTTGGC TAATAACAAA GAAATGGCCA TGGGGTTTGA TTCACTGCCT
GTGGTAAATA CTCAATTTAC TCAAGATTTG CCCAGCGACC GAGTTAAGAC TGCGGCCAAT
TCACTAGCAA ACTCAAGTAC ATTGGTGCAG TTTTTTGATC GTGAAGCCAA GGATGATATT
GCGAAAAATG CTGCGAGAAG TATCGCTAAA AGTATTTACG AAGATAACTC AGCCCCCTTG
CGTGAGGGAA TATTGAAGCG CACTCATATC GATTTTAAAA TGAATATTTA TGCGCAAGCC
GCTGAACTTC CTCAACTATA TTTTGCTTCA GTCACTGGAT TGAAAGAGTC GTTTTTTGCC
TCAAACTTGA TGCAAGATAT TTATCAGCAA TTGGGCTATG GCATATCAGT CACGCGGTTT
GGCTCCCTTG AAGCGTCACT TAACGCTTAT CGATTTGGCG GGGATGGAGA GTTAATCCGA
GTTGATGGTT ACAAACATCT TGCTCCTTCT TTGCAGCAAG TACCGGAACC TTTAGCCAAT
GTATCGTTTT ACTTGGTATG TAAAGATCTC GATATGTGTG CCACTAGCCT GCCAAAAGCG
AGTGAAGTAT CAGTTATTAA TGATTTACTG GTCGTTAATA ACTGGGCCAA CGAGAATCAG
GTTAAGCTCA AAAAGTACGA TACGGTCGAG ACCTTATTTC GTGCGTTCAA TGACAATGAA
CAAGGGTTAA TGGTGCTCGG TGCCAGCGAG ATTATCGACA ACAAATTGCT CATCAGTAAC
AGCTCCTACA GAACAATTAT TACTGTACCC CTTTATCACT ATGTGCATAA TAAACATAAG
GAATTAATTC CTTTGATTGA CAGTGCACTA AAAGAATATA AAAAAACTGA GCAATACCAA
ACGCTGAAAA ACCGATATTG GTTACAGCAT AACTGA
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| Protein sequence | MSNIINILWG VLFFLSFSAI AQAQQVLSVA VLTTNERQSD IYRGAFNDFS TQSIQYDVKV
TFFSDKEFKR LLPRWLETGE FDLLYWQAGE RLRSLIAQDV IQPIDSLLPR KELQRSIQPA
VLHSVTQQSV SNEDAVTYAL PIAQYGWGFY YNKAVFQELN VKPPNNWEEF IALCQRIKEQ
GANPLVQAVQ EGWPALAWLD YLSLDAGGLE FRQQVIDGQA LAGPTTETFL KQFEQLLSKE
WFFAPQRHWT WQQVMKVVEA KQAAMTLMGQ FAEGTIDPLR NKDIGFFSFP KANQMNQAEV
APLEIWVVPR SAKNKAHLAP LLRFLLANNK EMAMGFDSLP VVNTQFTQDL PSDRVKTAAN
SLANSSTLVQ FFDREAKDDI AKNAARSIAK SIYEDNSAPL REGILKRTHI DFKMNIYAQA
AELPQLYFAS VTGLKESFFA SNLMQDIYQQ LGYGISVTRF GSLEASLNAY RFGGDGELIR
VDGYKHLAPS LQQVPEPLAN VSFYLVCKDL DMCATSLPKA SEVSVINDLL VVNNWANENQ
VKLKKYDTVE TLFRAFNDNE QGLMVLGASE IIDNKLLISN SSYRTIITVP LYHYVHNKHK
ELIPLIDSAL KEYKKTEQYQ TLKNRYWLQH N
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