| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3981 |
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| Symbol | |
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| ID | 4175761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4792863 |
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| End bp | 4793747 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638057009 |
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| Product | HflC protein |
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| Protein accession | YP_663535 |
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| Protein GI | 109900280 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
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| TIGRFAM ID | [TIGR01932] HflC protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.515796 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAATT TCTTAATCGT CATCATTATC GCACTAGGTG CATTGGTCCT TAGCTCACTG
TTTGTCGTGG ACGAAGGTGA AAAGGCCATC GTGATTCAAT TCGGTAAAGT TCAACGTGAT
AGCGACAGCG GTGAAACCGT GGTTTTCGAG CCCGGCTTAC ACTTTAAGCT ACCGCTAATT
GACCGCGTTG TAACCCTAGA CGCACGTATT CAAACATTGG ATGAAGTAGC TGACCGTTTC
GTTACGTCAG AGAAAAAGGA CTTAATCGTT GATTTATACG TCAAATGGAA AATCAAAGAC
TTTGCTAAAT ACTACTTGGC AACAGGTGGC TTTAAAGACA ACGCTGAAAT CCTTTTACAA
CAAAAAGTAA ACAACGGACT ACGTTCTGAA TTTGGTACTC GTACCATTTC GCAAATCGTA
TCTGGTGAGC GCTCAGAGTT GATGGACGAA GCGATGGCGC AAGCATCAGA TAGCTCAGAT
GAACTCGGTA TCGAAATTGT TGACGTACGT GTTAAGCAAA TCAACTTACC GCTGGAAGTA
CGTAACTACA TTTTCCAACG TATGCGTACT GAACGTGACG CGGTTGCCCG TGAGCATCGC
TCTGAAGGTA AAGAGAAAGC TGAATTCATC AAAGCAAATA TGGACGCAAA AGTGACCGTA
ATGCTTGCTG ACGCAGAACG TAACGCCCGT AAATTACGTG GTGAAGGGGA TGCAAAAGCC
GCTGAAATTT ACGCTAAAAC CTATACCAAA GACGCTGAGT TTTATAACTT CCTACGTAGT
ATGGATGCAT ATAAGAACAG CTTCAGCAAC AAGCAAGACG TCATCGTGCT TGAGCCTGAC
AGTGACTTCT TTAAGTACAT GAAGAACGAA ACAGGCCAAA ACTAA
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| Protein sequence | MKNFLIVIII ALGALVLSSL FVVDEGEKAI VIQFGKVQRD SDSGETVVFE PGLHFKLPLI
DRVVTLDARI QTLDEVADRF VTSEKKDLIV DLYVKWKIKD FAKYYLATGG FKDNAEILLQ
QKVNNGLRSE FGTRTISQIV SGERSELMDE AMAQASDSSD ELGIEIVDVR VKQINLPLEV
RNYIFQRMRT ERDAVAREHR SEGKEKAEFI KANMDAKVTV MLADAERNAR KLRGEGDAKA
AEIYAKTYTK DAEFYNFLRS MDAYKNSFSN KQDVIVLEPD SDFFKYMKNE TGQN
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