Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3980 |
Symbol | |
ID | 4175760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4791711 |
End bp | 4792859 |
Gene Length | 1149 bp |
Protein Length | 382 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638057008 |
Product | HflK protein |
Protein accession | YP_663534 |
Protein GI | 109900279 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0330] Membrane protease subunits, stomatin/prohibitin homologs |
TIGRFAM ID | [TIGR01933] HflK protein |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.758687 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTTGGA ATGAGCCCGG TGGTAACAAT AACGATCCGT GGAAGAACCG CGGTGGTCGC GATCAAGGTC CACCTGATTT AGACGAAGTA TTTAAAAATA TTTTAAATAA ATTCGGAAAG TTCGGTGGTG GCAAAGGCGG CTCTTCTGAC GGCAAAGGCT TCGGTTTGGG TCTTGGTTTG GTTGTTGGCC TCTTAGTTAT CGTTTGGTTC ATCAGTGGTT TTTACACCAT ACGTGAAGCT GAGCGCGGTG TGGTATTGCG TTTCGGTGAG TTCAGCCACT TTGTTGAGCC TGGTCTACGC TGGAAACCGA CGTTCGTTGA TAGTGTGTTA CCCGTTGACG TGCAAACGGT ACGTTCACTG CCTTCTTCTG GCTCTATGCT GACCGAAGAT GAAAACGTGG TGCGGGTAGA GATGGAAGTA CAATATCGAA TTCTTGAACC GTATAAGTAC AGCTTCTCGG TGACTAGCCC AGAAACAAGC TTGAGCCAAG CGTTTGACAG TGCCATTCGC TACGTAGTGG GTCATTCAAA AATGGATGAC ATCCTCACCA GCGGCCGTGA AGTGGCACGT CAAAATGTAC GTGACGAACT TCAAGCAATT TTAGAACCCT ACGATATGGG GATCTCAATA GTTGATATGA ACTTTAAAGA TGCCCGCCCT CCAGAAGAGG TGAAAGCCGC ATTTGATGAC GCTATTGCCG CCCAAGAAGA TGAGCAACGC TTTATCAATG AAGCAGAAGC TTATTCTCGT GAAATCGAGC CTCGTGCTCG TGGTCAAGTC AATCGTATGG CTGAAGAAGC GCAAGCATAT AAAGAGCAAT CTATCCTGCA GGCGCAAGGT GAAGTTGCAC GTTTCGAAGA GTTGCTTCCT CAATATAAAG CAGCCCCTGA AGTGACGCGT AGCCGTATTT ACTTGGAAAC ATTGGAAGAA GTGTACGCTA ACACCAGCAA AATCATGGTA GACACCAAAG GTAGTGGCAA CATGCTTTAT CTACCGCTAG ACAAAATCCT GGAGAAACAA GCCTCCAGCA CATCGCCATC AACAAACCGT AGAACGCTAG AAGGTTTACG TAATCAAGAT CCAGTATCAA ATAGTGGCTC ACAAGATAAC GGCATTCGTA GTGGCAGTTC ACGTAGTGGG AGAAACTAA
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Protein sequence | MAWNEPGGNN NDPWKNRGGR DQGPPDLDEV FKNILNKFGK FGGGKGGSSD GKGFGLGLGL VVGLLVIVWF ISGFYTIREA ERGVVLRFGE FSHFVEPGLR WKPTFVDSVL PVDVQTVRSL PSSGSMLTED ENVVRVEMEV QYRILEPYKY SFSVTSPETS LSQAFDSAIR YVVGHSKMDD ILTSGREVAR QNVRDELQAI LEPYDMGISI VDMNFKDARP PEEVKAAFDD AIAAQEDEQR FINEAEAYSR EIEPRARGQV NRMAEEAQAY KEQSILQAQG EVARFEELLP QYKAAPEVTR SRIYLETLEE VYANTSKIMV DTKGSGNMLY LPLDKILEKQ ASSTSPSTNR RTLEGLRNQD PVSNSGSQDN GIRSGSSRSG RN
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