Gene Patl_3979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3979 
Symbol 
ID4175759 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4790349 
End bp4791647 
Gene Length1299 bp 
Protein Length432 aa 
Translation table11 
GC content46% 
IMG OID638057007 
ProductGTP-binding protein, HSR1-related 
Protein accessionYP_663533 
Protein GI109900278 
COG category[R] General function prediction only 
COG ID[COG2262] GTPases 
TIGRFAM ID[TIGR03156] GTP-binding protein HflX 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGTTTGACC GTTATGAAGC AGGCGAACAG GCTGTATTAG TACATATAGA TTTTTCTGAT 
GACAACAGCA AAGAAGATCT ACTAGAACTT CAGTTGTTGG CCACATCTGC GGGAGTAAAC
GCGGTTGATG TCGTTACTGG CAGCCGTAAT GCTCCTCATA CGCGCTATTT TGTCGGCAGT
GGCAAAGCAG AAGAAATAGC GAACACCGTT AGAGCATCTG AAGCTGATGT GGTTATTTTT
AATCACAGCT TATCGCCCTC TCAAGAACGT AACTTAGAGC AATTATGTAA ATGCCGTGTG
CTGGATCGCA CCGGATTGAT TTTAGATATT TTTGCGCAAC GTGCACGTAC CCACGAAGGT
AAGTTACAAG TAGAGCTCGC CCAACTTAAA CATATTTCTA CACGTCTTAT CCGCGGCTGG
ACTCACCTTG AGCGTCAAAA AGGCGGGATA GGCTTGCGTG GTCCAGGCGA AACACAATTA
GAAACCGACA GACGTTTGCT GCGTGCGCGT ATTAAAAGTA TTCAGGGGCG GTTACGCAAA
GTACAAAAAC AGCGTGAACA AGGCAGGCGC GCGCGAGTGC GGGCTGAAAT TCCGACCCTA
GCGCTTGTGG GTTATACCAA TGCCGGTAAG TCGACCTTGT TCAATACGAT CACTCAGTCT
GAGGTATACG CAGCGGATCA ACTATTTGCC ACGTTAGACC CAACATTGAG ACGAATTGAG
TTACAGGACG TTGGCCCAGC AATATTGGCT GACACGGTTG GATTTATTCG CCATCTTCCT
CATGATTTGG TCGCCGCTTT CAAGGCAACA CTTCAAGAAA CGCAGCAGGC AGATTTATTG
CTCCACGTGG TTGACTATTC CGATGACCAA TTTCGTGAGA ATATCGATCA GGTTAATGAG
GTATTGGACG AGATTGACTC TGACGAAATA CCCCAATTAA TGATTTGTAA CAAGATTGAT
CGCATGGACG GCGTTGAGCC ACGGATCGAT CGAGATGAAA ACGGCGTACC AACTCGCGTC
TGGATGTCGG CACAGCAAGG CTTAGGAACT GAATTATTGT TCGAAGCACT GAGCGATTGC
CTAGCACAGA ATATGGTGCG GCATCAGTTA CGCATTCCGC CGCAAGAAGG TAAACTACGA
GGTGATTTGT TTAATTTAAA CTGCATCTCT GAAGAATCTT ATGCCGATAA TGGTGACTGG
TTAGTAGAGA TACATATGCC TCTTGCAGAT TGGCAGCGTT TGGCAAAACA CTCTGATGCT
GATTTAGCAG CCCTTATTGT GAAAAGCACT GAAGCATAG
 
Protein sequence
MFDRYEAGEQ AVLVHIDFSD DNSKEDLLEL QLLATSAGVN AVDVVTGSRN APHTRYFVGS 
GKAEEIANTV RASEADVVIF NHSLSPSQER NLEQLCKCRV LDRTGLILDI FAQRARTHEG
KLQVELAQLK HISTRLIRGW THLERQKGGI GLRGPGETQL ETDRRLLRAR IKSIQGRLRK
VQKQREQGRR ARVRAEIPTL ALVGYTNAGK STLFNTITQS EVYAADQLFA TLDPTLRRIE
LQDVGPAILA DTVGFIRHLP HDLVAAFKAT LQETQQADLL LHVVDYSDDQ FRENIDQVNE
VLDEIDSDEI PQLMICNKID RMDGVEPRID RDENGVPTRV WMSAQQGLGT ELLFEALSDC
LAQNMVRHQL RIPPQEGKLR GDLFNLNCIS EESYADNGDW LVEIHMPLAD WQRLAKHSDA
DLAALIVKST EA