Gene Patl_3978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3978 
Symbol 
ID4175758 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4790072 
End bp4790323 
Gene Length252 bp 
Protein Length83 aa 
Translation table11 
GC content42% 
IMG OID638057006 
ProductRNA chaperone Hfq 
Protein accessionYP_663532 
Protein GI109900277 
COG category[R] General function prediction only 
COG ID[COG1923] Uncharacterized host factor I protein 
TIGRFAM ID[TIGR02383] RNA chaperone Hfq 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTAAAG GGCAGTCTTT ACAAGACCCA TTTTTAAATG CGCTACGCAA AGAGCGTATT 
CCTGTATCAA TTTATCTTGT CAACGGGATT AAATTGCAGG GTCAAGTTGA GTCATTTGAC
CAATTTGTCA TTTTGCTAAA AAACACCGTC AGCCAAATGG TATATAAGCA TGCAATTTCT
ACCGTCGTTC CTTCACGGGC GTTACCGGTT GCTGCTACTA ATCCTCATGC GGATGCTGAC
GAGAACCAAT AG
 
Protein sequence
MAKGQSLQDP FLNALRKERI PVSIYLVNGI KLQGQVESFD QFVILLKNTV SQMVYKHAIS 
TVVPSRALPV AATNPHADAD ENQ