Gene Patl_3975 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3975 
Symbol 
ID4175755 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4785800 
End bp4787092 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content48% 
IMG OID638057003 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_663529 
Protein GI109900274 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGCTCT TGGTCGTTCC TGCCAGTTTC GCCAAAAATG CCATTGATAG TGTCCGAATT 
TGGCCCTCCC CCGGCAGCAC TCGGATCGTA TTTGATCTTG AAGACACACC TGAATATAGC
TATTTCACCT TAGGTAACCC TGAGCGCTTA GTCATTGATT TGGCGGACAC TGAGAAAAAT
TTCGACTTTG CTAAACTCGC GAATAAGAGC CCTTTAGTCA AAAAAGTTCG CTATAGCTCA
GCCAAAGAAA AAGGCAGCAT ACGGGTTGTC ATTGAGTTAA AGAAAAAGCT CGAAAGCACG
CTATTTGCCT TGCCACCGAC CGAGCCCTAT CGAAATCGTT TAGTAATAGA TTTAGATGAT
AAAAACGCCC CTCAAACTGC CCCTACTGTT GTCAAACACA ATAATTCTCA ACAATCACGC
GACATTGTGA TCGTGTTAGA TGCTGGCCAT GGCGGTGAAG ACCCTGGGTC TATTGGCCGC
GGCGGCACAT TTGAAAAAAA TATCACCCTG AATGTCGCCC AGCGCTTAGC CAAACTGATC
GATGCCGAAC CCGGAATGAA AGCGGTTATG ACGCGCTCAG GCGATTATTA TATTTCCCCT
AATAAACGCC CCGACATCGC CCGCAAGCAC AAGGCAGACT TGCTGATATC AATACACGCC
GACGCCTTTA CTACACCTCA ACCGCGAGGG GCTTCGGTGT GGGTATTATC TATGCGCCGC
GCTAATTCAG AGTTAGGCCG TTGGATGGAA AAATCTGAAC GCCACTCTGA GCTACTTGGA
GGGGCTGCAG AGGTCATTCA AGACACCGCA AGCGAGCGCT ACTTAACACA AGCCTTGCTA
GATATGTCTA TGGATCACTC TCTCACCACC AGTTACGATT TAAGCCGTAA GGTCATAGGC
AAGTTGCGGG GCATCACCAG AATGCACAAA AAAATCCCCC AAGCGGCTAG CTTAGCGGTA
TTAACCGCGC CTGATATTCC GTCCATTTTG GTTGAAACGG GTTTTATCTC AAACCCAAGC
GAAGAGAAGA ATTTGAATTG GTCCAAATTC CGTCAGCAAC TGGCCGATTC AATCTTTACA
GCGGTGAAAA CCCACTTTTT AGACTCCCCG CCTGATGATT CATTATGGGC AAAACAGAAA
CGTCATAATC GTACTCACAG AGTGCGCAGC GGCGAAAGCC TATCGTTACT TGCCCAGCGC
TACAATGTAG ACGTAGGTGA TATTAAAGCC GCGAATAACT TAAGCTCCGA TGTAGTACGC
ATAGGACAAG TGCTGACTAT TCCTCGCACT TAG
 
Protein sequence
MLLLVVPASF AKNAIDSVRI WPSPGSTRIV FDLEDTPEYS YFTLGNPERL VIDLADTEKN 
FDFAKLANKS PLVKKVRYSS AKEKGSIRVV IELKKKLEST LFALPPTEPY RNRLVIDLDD
KNAPQTAPTV VKHNNSQQSR DIVIVLDAGH GGEDPGSIGR GGTFEKNITL NVAQRLAKLI
DAEPGMKAVM TRSGDYYISP NKRPDIARKH KADLLISIHA DAFTTPQPRG ASVWVLSMRR
ANSELGRWME KSERHSELLG GAAEVIQDTA SERYLTQALL DMSMDHSLTT SYDLSRKVIG
KLRGITRMHK KIPQAASLAV LTAPDIPSIL VETGFISNPS EEKNLNWSKF RQQLADSIFT
AVKTHFLDSP PDDSLWAKQK RHNRTHRVRS GESLSLLAQR YNVDVGDIKA ANNLSSDVVR
IGQVLTIPRT