Gene Patl_3961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3961 
Symbol 
ID4175741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp4771522 
End bp4772136 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content46% 
IMG OID638056989 
ProductGTP cyclohydrolase II 
Protein accessionYP_663515 
Protein GI109900260 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0807] GTP cyclohydrolase II 
TIGRFAM ID[TIGR00505] GTP cyclohydrolase II 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.627344 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACAAC ATCAGAAGTA CGAATTCGTG AGCTCAGCCT CCCTTCCCAC GCGCTGGGGC 
CAGTTCACCA TACACGGGTT CGTTGAAACC GCTACCGAAC AAGAACATGT CGCCTTAACT 
TTCGGACAAT GGCAATCTGG TGATGTGGTA CCCATGAGAA TTCATTCTGA ATGCTTAACC 
GGAGACGCAT TATTCAGTAC CCGTTGTGAC TGCGGCGCAC AGTTAGAAAA GGCGCTACAA 
AATATTGTAG AGCAAGGCAA AGGAGTGCTG CTTTATTTAC GTCAAGAAGG GCGTGGCATT 
GGCTTGTTAA ACAAAATTCG AGCGTATAAT TTGCAAGACC AAGGCTTAGA TACGGTTGAA 
GCAAACGAGC ATTTAGGCTT TGACGCTGAC TTGCGAGAAT ACGATATGTG CAAGTTAATG 
CTTGATACCC TCAATGTGCA ACGGGTGAAT TTGATGACCA ATAATCCTAA AAAGCGTAAA 
GCGCTAGAAG CGATGGGCAT TGAAGTGGTC AGCCGCACGC CAATTGACCA CGGCATTACA 
GATGACAACC GCCATTATAT TCGCACTAAA ACGGAAAAAT TGGGTCATGT GTTTGACCCG 
CACCTACTCA AGTAA
 
Protein sequence
MKQHQKYEFV SSASLPTRWG QFTIHGFVET ATEQEHVALT FGQWQSGDVV PMRIHSECLT 
GDALFSTRCD CGAQLEKALQ NIVEQGKGVL LYLRQEGRGI GLLNKIRAYN LQDQGLDTVE 
ANEHLGFDAD LREYDMCKLM LDTLNVQRVN LMTNNPKKRK ALEAMGIEVV SRTPIDHGIT 
DDNRHYIRTK TEKLGHVFDP HLLK