| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3960 |
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| Symbol | |
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| ID | 4175740 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4768536 |
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| End bp | 4771433 |
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| Gene Length | 2898 bp |
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| Protein Length | 965 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056988 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_663514 |
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| Protein GI | 109900259 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.283366 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCCGCT CATCTTACTT TACTTCCTCG CTGTGCCTTA TGTTGCTGCT TATCATGCAA
CTTGGGCTGG TGCTTAAGGC GCAAACCACG CAAACCAGCG TTAATATTAA TGACTCAACG
CCTTCCGTTA ATTTAATCAC CTCTAGCCAT TGGCTTGTAG CCGATAATAA AGTGCAGCTG
TCTGACGTGC AGGAACTGAA AACGTGGCGT GATACCTTCT CTCCGCAACC TCTAAATGAT
AATCAAAGCC TATGGGGCAG AGTTACCCTG AGCACTGATA GTAATCATCG ACCTTTTTTT
ATCAGTATTG ATAATCCACG TATCGACGCG TTGGATATCT ACGTGTTAGA TGAGAGAGAC
AGGATCATTA ACTCATATCG CCTAGGTACA ACACGACCTC ATGATAACCG CCCTTTTGAG
CATAGGTTAT TCGTGGTTCC GGTAGATATT CCTTATGCTC AGCCGCGAAA CATCTATATT
AAGATCCGCG ATGAAGGCCC GCTGGTGTTC GCTTTTGATG TAAAATCAGA GACAGCACTG
ATTCAAAAAG AACAACGAAA CAGCACGATT TTCTCCTTGT TCAGCGGCGC ATTGACCATG
ATGGTGCTGT ACTTTTTGAT CACCTATACG TTATTGCGCA GCCCGGTGCG CTTTTGGTTT
TCGGTAGCCA GTACGGCTTA TTTACTGCTG TTTTTAAATA GCCAAGGTGT GGTGAGTCAT
GTCACTGGTT TCAATCAATA CATAGACAAC CTAAGCACTA TTCTGTGTGC CCTGTTGCTG
TTTTCATTAG CGAAAATAAC CTTCACTATA TTTCGCCCAC TGCCTACCTA CTACCGCTAT
TTCCTATATG CCATGGGTTG GTTAAGTGCT GCATCGGCGT TTGTACTTAA TAGCTACCAA
CAGATTTTAT TGGTGTCTGG CGCTTCTATA TCATCCATTG TGGTTATCGC CGTGTTAGCG
ATATTTTATC GTTACAAAGG ACACACCATC AGTAATCGCG TGTTTGCTTT GGGTTTAACG
CTTATTAGCC TGACGACGGT GGCACACATT GGACTTTATC TGAACTGGGT GGCTTTTCCC
GAACAACTGT CACTCACGCT TAGCACGTTA ATCGTTATCG GTATTGTATT GATTGCCGTT
GCCATCGCCG CCCACGAAAA AGTCATCGCA TTTAGGCATT ACAACGAGCA ACAAACTTCG
ATTCGCGCCT TACAACAGTT CGTCGATATG TTTGAAGAAG CCCCAGAAGG GCGCTTTATC
TCCAGCCTCG ATGGTCAATT GTTACGCGCT AATCTAGCCA TGGCGAAGAT ATTTGGCTAT
GAAGACGTAG CGCAAATGAA AGCCCACTTG CCCACAATGT CCGCCTTGTA TGCAGAGCCA
AATGAACGAG AGCTGCTGCT AGGTGAACTC CATAAAAACC AATCCACGTT AAGTAAAGAA
TTACGCGGTA GAACACGGCA AAATCAGGAT CTTTGGCTAT CTGTGTCTGC TCAATTAAGC
AAAAATGGCG ACACTGATGA AAAACTAATT TGTGGCTCAG TAGTAGACAT TAGCGCGCGA
AAGTCTGACC ACCAAAGCAT TGAGTACATG GCCAGCCACG ATACGTTAAC CGGCTTTTAT
CAGCGCCAAG CATTCGAGAA AAGCCTACAT GAAGCGATAC TCTTCGCTAA ACAGCAGCAA
GAAGAATTGA CCTTATTGCA CGTAAACATT GATCAATTTA AAGCGATCAA CGATACACAT
GGCCATAAAG CCGGCGATGC GGTACTTAGG CAGCTTTCGC AGTTAATGAA AAAGATTGTC
AGCGATGATG GCATGATAGG TCGCTTAGGC GGAGATGAAT TTGGTATTTT ACTGGTTGGC
AATAATGCCC AGAACAGTTT TATGCTCGCC AATAAACTAT TGAATGCCGT ACAAGTACAT
GAGTTTACAT GGGAAGAACG CCCCTTGACC CTTGGGGTCA GCATTGGCCA AGTACCATGG
AATGACACAA TATCAAGCTC AGAGCAGCTG CTCAGTATGG CCGATTCGGC CTGTTATATG
GCGAAAAAGC ACGGCCGGAA CCGACTTCAC ACTTACTCCT CAACAGACAA GCAAATTGCC
AAATACGAAT CTCAATTGAG TTGGCTACCC CGTATACAAC ACGCACTGAG CCACAACGGT
TTTGAACTTC ATTGCCAACC GTATATGCCA ATGACCTCTA TTGCTAAGGG GCACCACTAC
GAAATATTGT TGCGCTTAGT GGATGAACAC GACCAGCGCA TACTGCCCAG TGAGTTCTTA
CCCGCAGCTG AGCGCTATAA CCTCAGTGCC AAAATTGACC GTTGGGTTAT CGACACCTAT
TTTGCTTGGT TAGCACAAAA CCCCCAGCAC AAAGCAGATC TAATGCGTTG TAATATCAAC
TTAAGTGGCC ATTCCCTGGG TGAACAGGAT CTTAAACTGT TTATTTTGAG CGCGTTTGAG
AAATACCAAG TACCTCACAA TAAGATTTGT TTCGAGATAA CGGAAAGCAT GGCTATCTTA
AAACTCGACG AAACCATTGA GTTTATTGAT ACATTCAAAG CGCTTGGCTG TACATTCGCT
CTAGATGACT TTGGCAGCGG CTTTTCATCA TACAATTACC TAAAAAATCT CCCTGTGGAC
CAAGTCAAAA TTGACGGCGA ATTCGTCAAA AATATTCTTA TTGCTCCCGT GGATATGGCA
ATGGTCAATT CCATCAAAGA CATCGCCAGC GCGATGAAAA TACAAACCGT AGCGGAATAT
GTAGAATCAA AAGAGATCAT GGTGGAATTA GGTAAAATTG GCGTTGATTT TGTTCAAGGA
TTTGGCGTGA ACAAACCCAT TTCGCTAAGC ACGATGACAG ACCAGAACAG TGTCTTTAAT
TCAGAATCGG GGCTGTAG
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| Protein sequence | MRRSSYFTSS LCLMLLLIMQ LGLVLKAQTT QTSVNINDST PSVNLITSSH WLVADNKVQL
SDVQELKTWR DTFSPQPLND NQSLWGRVTL STDSNHRPFF ISIDNPRIDA LDIYVLDERD
RIINSYRLGT TRPHDNRPFE HRLFVVPVDI PYAQPRNIYI KIRDEGPLVF AFDVKSETAL
IQKEQRNSTI FSLFSGALTM MVLYFLITYT LLRSPVRFWF SVASTAYLLL FLNSQGVVSH
VTGFNQYIDN LSTILCALLL FSLAKITFTI FRPLPTYYRY FLYAMGWLSA ASAFVLNSYQ
QILLVSGASI SSIVVIAVLA IFYRYKGHTI SNRVFALGLT LISLTTVAHI GLYLNWVAFP
EQLSLTLSTL IVIGIVLIAV AIAAHEKVIA FRHYNEQQTS IRALQQFVDM FEEAPEGRFI
SSLDGQLLRA NLAMAKIFGY EDVAQMKAHL PTMSALYAEP NERELLLGEL HKNQSTLSKE
LRGRTRQNQD LWLSVSAQLS KNGDTDEKLI CGSVVDISAR KSDHQSIEYM ASHDTLTGFY
QRQAFEKSLH EAILFAKQQQ EELTLLHVNI DQFKAINDTH GHKAGDAVLR QLSQLMKKIV
SDDGMIGRLG GDEFGILLVG NNAQNSFMLA NKLLNAVQVH EFTWEERPLT LGVSIGQVPW
NDTISSSEQL LSMADSACYM AKKHGRNRLH TYSSTDKQIA KYESQLSWLP RIQHALSHNG
FELHCQPYMP MTSIAKGHHY EILLRLVDEH DQRILPSEFL PAAERYNLSA KIDRWVIDTY
FAWLAQNPQH KADLMRCNIN LSGHSLGEQD LKLFILSAFE KYQVPHNKIC FEITESMAIL
KLDETIEFID TFKALGCTFA LDDFGSGFSS YNYLKNLPVD QVKIDGEFVK NILIAPVDMA
MVNSIKDIAS AMKIQTVAEY VESKEIMVEL GKIGVDFVQG FGVNKPISLS TMTDQNSVFN
SESGL
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