Gene Patl_3959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3959 
Symbol 
ID4175739 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4766965 
End bp4768407 
Gene Length1443 bp 
Protein Length480 aa 
Translation table11 
GC content43% 
IMG OID638056987 
Producthypothetical protein 
Protein accessionYP_663513 
Protein GI109900258 
COG category[S] Function unknown 
COG ID[COG0397] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.901643 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTAG ATCATTCATA TGCAACGCAT TTAGGTGATT TAGGCGCCTT AACTAAGCCT 
TTGCGTGTGG CAAACCCTCA ACTTGTTGAG GTTAACCACA CCTTACGCGA CGCACTGCAA
CTACCAGCAT CATGGTTTAC GCAATCTAGC ATAATGTCGA TGCTTTTTGG CAATACAAGT
TCATTTACGA CACATTCTTT TGCACAAAAG TACGGTGGTC ATCAGTTTGG TGGATGGAAT
CCAGACTTAG GTGATGGACG TGGTGTATTG CTTGGAGAAG CGAAAGACAA ATTCGGAAAA
TCATGGGATT TGCATCTTAA AGGCGCTGGT CCTACGCCCT ATTCACGCTT CGCGGACGGG
CGAGCTGTAT TGCGCTCAAC CCTGCGCGAA TACCTCGCAA GTGAAGCATT GCACCATATG
GGTATTCCTA CCTCAAGGGC ACTTTGCTTA ATTACCAGTG ACGAACCCGT GTACCGAGAA
AAACAAGAAA AAGCCGCTAT GATGATCCGA GTCAGCCAGA GTCATATTCG TTTCGGCCAT
TTTGAATACT TTTATCACAA TGGTGAACTG GACAAACTCA AGCGGTTATT TGACTACTGC
TTTGAACATC ATTTTTCTGC ATGTTTGCAC AGTGAATCTC CCCATTTAGC CATGCTAGAA
AAAATAGTCA CGGATACCGC TACCCTAATT GCAAAATGGC AAGCATACGG TTTTAACCAT
GGCGTTATGA ATACTGACAA TATGTCGATT CACGGGATTA CCTTCGATTT TGGCCCTTAT
GCTTTTTTAG ATGATTTTAA TCCTAAATTT GTCTGTAACC ATTCTGATCA TCGAGGGCGA
TATGCATTTG AGCAACAGCC TAGCGTGGGT TTGTGGAACC TAAATGCCCT TGCGCACGCA
TTCACCCCCT ACTTGAGTGT CGAACAAATC AAGGGGGCGC TAAGTCAATA TGAAGCAAGC
TTAATGGCTG AATTTTCACA ACTTATGCGC CAAAAGCTTG GGCTGTACGA AAATACCCAA
AACACCGCCG AACTAGTGAA TCGTTGGCTC GACCTAATTT ATCAAGACAA GCGTGATTAC
CACATTAGCT TTCGATTATT GTGCGAAGTT GATGAACACG GTGAAAATCA GCCACTTGTT
GATCACTTCA TACAACGCGA CACGGCTAAA ACTTGGTTAG AACATTATCA AAACGCACTG
ATTACTCAAG GTGTAAAGAG GCAAGAACGC CAAGCAAACA TGCGCAATAT TAACCCCGAA
TATGTACTGC GGAACTACCA AGCACAACTG GCAATTGATG CAGCACAAAA CGGAGATTTT
TCACGTTTTA GAAAGTTATT ACATGTGCTG CAACACCCAT TTGAAAGCAA ACCAGAATAT
GCCGAATTTG CTAAACCACC CCCTAACTGG GGTAAACACA TGGAAATATC ATGCAGCAGT
TAA
 
Protein sequence
MNLDHSYATH LGDLGALTKP LRVANPQLVE VNHTLRDALQ LPASWFTQSS IMSMLFGNTS 
SFTTHSFAQK YGGHQFGGWN PDLGDGRGVL LGEAKDKFGK SWDLHLKGAG PTPYSRFADG
RAVLRSTLRE YLASEALHHM GIPTSRALCL ITSDEPVYRE KQEKAAMMIR VSQSHIRFGH
FEYFYHNGEL DKLKRLFDYC FEHHFSACLH SESPHLAMLE KIVTDTATLI AKWQAYGFNH
GVMNTDNMSI HGITFDFGPY AFLDDFNPKF VCNHSDHRGR YAFEQQPSVG LWNLNALAHA
FTPYLSVEQI KGALSQYEAS LMAEFSQLMR QKLGLYENTQ NTAELVNRWL DLIYQDKRDY
HISFRLLCEV DEHGENQPLV DHFIQRDTAK TWLEHYQNAL ITQGVKRQER QANMRNINPE
YVLRNYQAQL AIDAAQNGDF SRFRKLLHVL QHPFESKPEY AEFAKPPPNW GKHMEISCSS