Gene Patl_3954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3954 
Symbolrbn 
ID4175734 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4763354 
End bp4764256 
Gene Length903 bp 
Protein Length300 aa 
Translation table11 
GC content45% 
IMG OID638056982 
Productribonuclease BN 
Protein accessionYP_663508 
Protein GI109900253 
COG category[S] Function unknown 
COG ID[COG1295] Predicted membrane protein 
TIGRFAM ID[TIGR00765] YihY family protein (not ribonuclease BN) 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGTCCA AGGTTATTTG GTCGGATGTA TTAAGGAGCT GGTTACCTAA AGCGAATATT 
TTTGTTCGTA TGTTTGTAAA CCATTGCCAA CGAGATGGGA TCACGGTGTC AGCAGGGCAT
TTAGCCTATG TATCCTTATT ATCTCTAGTG CCATTTATCA TGGTGTTCTT CACCATATTG
TCGGCCTTTC CTGCTTTTTC TGAGGTGCGA GGTGATATCG AAGCCCTGAT CTTCGGTAAT
TTTATTCCGA CTTCTGGGGA CCAAATTCAA GGCTACGTCG CCGAGTTCGT GGGTAACGCA
TCAAAAATGG GTGCGATCGG GATTTTATCC TTGGTGGTGG TGGCCTTATT GCTCATCTCG
AATATAGACA AAACCTTGAA CCGCATCTGG CAGGCAAAAA GCGAGCGCCC GATCATTTTT
ACGTTTGCGA TTTATTGGAT GATCCTCACG CTAGGCCCCT TGTTAATTGG CCTAAGCGTC
ATCATGAGTT CTTATTTGGT TGCTTTTGCT AATTCGGCTG AAGCCTACAC CATGGGCGCA
ACAACCGCCA TGCTCAAAAT TGTGCCTTTT ATCGCGTCCG TCTGCGCTTT CTTTATTCTG
TATATGATTG TCCCTAATAA GCGGATTAAT CCTCGCCATG CCCTCGTTGG TGCGTTCATG
GGGGCGCTAC TGTTTGAGTT ATCGAAGAAA GGATTCTCGT TTTACATAAC GCATTTCCCG
TCTTATCAAA TGATTTACGG CGCTATGGCC GTTATTCCTA TTTTATTCGT TTGGGTGTAC
TTGTCGTGGA TAGTGGTGTT GCTTGGGGCG GAACTAACCC ATGTGATTGA AGTGTTTTTT
CACGAAGAAT CTAAAGAGAA TTTTACGCAG GTCGATGAGG ATGACCCCCA ATCGCCTGCG
TAG
 
Protein sequence
MESKVIWSDV LRSWLPKANI FVRMFVNHCQ RDGITVSAGH LAYVSLLSLV PFIMVFFTIL 
SAFPAFSEVR GDIEALIFGN FIPTSGDQIQ GYVAEFVGNA SKMGAIGILS LVVVALLLIS
NIDKTLNRIW QAKSERPIIF TFAIYWMILT LGPLLIGLSV IMSSYLVAFA NSAEAYTMGA
TTAMLKIVPF IASVCAFFIL YMIVPNKRIN PRHALVGAFM GALLFELSKK GFSFYITHFP
SYQMIYGAMA VIPILFVWVY LSWIVVLLGA ELTHVIEVFF HEESKENFTQ VDEDDPQSPA