| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3947 |
|---|
| Symbol | |
|---|
| ID | 4175727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4757226 |
|---|
| End bp | 4758467 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638056975 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_663501 |
|---|
| Protein GI | 109900246 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3434] Predicted signal transduction protein containing EAL and modified HD-GYP domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.103414 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGCCT TTATTGCTCG CCAGCCTATC TTAGATCGCC AACGTGATGT GTTTGCCTAC
GAGTTACTCT TTCGTGACGG TAAGAACAAT TGCTATCCAG ATACGGCAAG AGACGAACGT
ACCGAAAAGC TGATTGCTAA GCATTATCTT ACCCTCGGAT TAGACGAGAT CTCTTGCAAT
AAAAAATCAT TTATTAACTT TCAAAAAGAA ACCTTAATCA ATGGTTTACC CTCTGTTCTA
GATCCCTCCA ACGTCGTAGT TGAATTATCC GATGCTGTAT TGCCACACGG CACCTTGCTA
GAAGTCTGCC AGCAAGTGAA GAGCTCAGGT TTTACTATCG CTTTGGACGA TCATAACTTG
GATCCCAAAT GGAATGATTT TCTGCCATTT GTTGACATCG TTAAAGTGAA TGTGATGCAA
AGCGATTACG ATGGTGTGGC GAAGAGTATG CCCAGGTTAT TAGATGCCAA TGTAAAGTTG
GTGGCTGAAC AGATTGATAG CCAGCAAGAT TTCGAAATAT ATCGAGATAT GGGGTTTGAT
TACTTCCAAG GTTACTTTTT TGCTAAGCCT GAGGCGATTA AGCAACAAAA TTTACCCACC
TCTAAGTTAA CGTTAGTGGA ACTTATGGGT GTCAGCTCTA GCGAAACCTT TGACATCGAG
CGTGTGAATT CTGTTATTGA GCATGATGTT GGCTTGTCTT ATATGTTGTT GCGCTTTGTC
AACAACCCTA TGGTGAATAA GCGCTACAGG ATCACGTCAT TGCGCCACGC AATAACTTAT
ATGGGTGAAG TCGAGCTTAA GAAGTTCGTG GCCCTGTTAG CGTTGGCCAA TCTAAATGAT
GATAAGCCGA TTGAGTTGCT GCACTTGTCG CTTGTAAGGG CGAAATTTTG CGACTTAGTT
GCCCGAGAAG CCAAAAAAGG GGATAACCCA CCAGTGGGCT TTTTGGTTGG CTTGTTCTCT
TTGCTTGATG CAATACTAGA CCAAGATATG GGCACACTGC TGAATCAGTT ACCCATTGAT
GATGAAGTGA AATTTGCTCT AAGCGGTGGC CAGAACGACT TGTCTATTTA TTTAGTTCTG
GCGAGGGCGT TTGAAAGTGC GAATTGGTTG AAAGTGATAC GTATCGCTGG GTTATTGAAA
ATTGACCAGA AACGTCTGCA CAGTATGTTT AATGAAGCCA TTATGTGGGG GAACGGTCTA
CGTCAGTCTG TTTCACCACA CTTTCCAGAA TCAAGAGCGT AA
|
|---|
| Protein sequence | MFAFIARQPI LDRQRDVFAY ELLFRDGKNN CYPDTARDER TEKLIAKHYL TLGLDEISCN
KKSFINFQKE TLINGLPSVL DPSNVVVELS DAVLPHGTLL EVCQQVKSSG FTIALDDHNL
DPKWNDFLPF VDIVKVNVMQ SDYDGVAKSM PRLLDANVKL VAEQIDSQQD FEIYRDMGFD
YFQGYFFAKP EAIKQQNLPT SKLTLVELMG VSSSETFDIE RVNSVIEHDV GLSYMLLRFV
NNPMVNKRYR ITSLRHAITY MGEVELKKFV ALLALANLND DKPIELLHLS LVRAKFCDLV
AREAKKGDNP PVGFLVGLFS LLDAILDQDM GTLLNQLPID DEVKFALSGG QNDLSIYLVL
ARAFESANWL KVIRIAGLLK IDQKRLHSMF NEAIMWGNGL RQSVSPHFPE SRA
|
|---|
| |