| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3944 |
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| Symbol | |
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| ID | 4175724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4753901 |
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| End bp | 4755358 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056972 |
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| Product | signal recognition particle-docking protein FtsY |
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| Protein accession | YP_663498 |
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| Protein GI | 109900243 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0552] Signal recognition particle GTPase |
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| TIGRFAM ID | [TIGR00064] signal recognition particle-docking protein FtsY |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000907128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCCAAGT TTTTCGGTTG GCTCAAAAAA GACAAGCCTA AGTCAGAGCC ACAAAATCCC
CCAAAGAGCA CACCAGAAGA AGCCCAAGAG GCACAATCAC AAATCGACGA TAACAGCGAT
GAGCGCCTTC TTGAGCAAGC GAATGAGCAA GCAAAACTGC AAAAAATTGA TGATCATGCT
GCCACCGAAG TAGAAAGCCC TTCTCACGGG CAACCTGCAG TGGAAGTTGA ACATACCTTG
GAAGAGCGTG CTGATACTGA GCACGACCAA AACATTATTC AAGTTGAAAC CCCAGCCTCG
GTTATTGACG CCAGTGAAGA CGCTATCACC AGCAACGTGG AGCCTGTGTC AGTTGCTGCA
TCAACTGAAC CGTCCGAAGT ATTTGAGGCC ACGACAGAAA TGTCTGAGGC AGATCTTCAA
CCTGTTGTTG AACATGAGCT AGAATCCCAG CCTGAGCTGG TGCCAGAGTC AAAGGCGAAG
CCTGAAGAAG AACCTGAAAA ACCAGTCAAA ATGGGGCTGT TTGCCAAGTT AAGACAAAGC
CTCTCACGCA CGAAAGAGAA CCTCGGCAGC GGCTTTATTA GCCTGTTTCG CGGTAAAGCC
ATCGATGATG ATTTATTCGA AGAATTAGAA ACTCAATTGT TGGTCGCCGA TGTAGGAATC
GATACCACCA GCAAAATTAT CTCTAGGCTA ACAGACAGCG CTAAACGCAA TCAGCTAAAA
GACGGTGAGG CGTTGTATCA ATTGCTGAAA CAGCAAATGA GCAACATATT ACAAGAAGTC
AGCCAGCCTC TTGAACCGAA AAGCGAAGAT GGCCCGTTTG TTATCTTAAT GGTGGGAGTA
AACGGCGTAG GTAAAACAAC CACCATCGGT AAAATGGCGA AACAGTTCCA ATCTCAAGGC
AAAAAAGTCA TGTTGGCTGC CGGTGATACA TTCAGAGCCG CAGCAGTTGA ACAACTGCAA
GTATGGGGTG AGCGTAATAA CATTCCTGTG ATAGCGCAGA AAACCGGTTC AGACAGCGCA
TCTGTTATTT ACGATGCATT AGAGTCTGCC AAAGCGCGTA ATGTGGATGT GCTAATCGCC
GATACCGCGG GGCGATTGCA AAATAAAGAT CACTTAATGG AAGAGCTGAA AAAAGTGGTA
CGGGTGATGC GCAAAATTAA CCCAAATGCG CCTCATGAAG TTATGCTGAC ACTCGATGCG
GCCACAGGCC AGAATGCCGT CAGCCAAACC AAGTTATTCA ACCAAGCGGT TGGACTAACT
GGAATCACAT TAACCAAGCT AGATGGCACC GCAAAAGGTG GGGTGATTTT TGCTTTAGCG
GATCAATTTA AAATCCCTAT TCGTTATATC GGTGTAGGTG AAGGCATCGA CGATTTACGC
CCATTTGCCA GTGATGAATT TGTTGAGGCA CTCTTCGCTG AAAACGGCGT TGAAAATAGC
GCTGAAAGCA CGACCTAA
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| Protein sequence | MSKFFGWLKK DKPKSEPQNP PKSTPEEAQE AQSQIDDNSD ERLLEQANEQ AKLQKIDDHA
ATEVESPSHG QPAVEVEHTL EERADTEHDQ NIIQVETPAS VIDASEDAIT SNVEPVSVAA
STEPSEVFEA TTEMSEADLQ PVVEHELESQ PELVPESKAK PEEEPEKPVK MGLFAKLRQS
LSRTKENLGS GFISLFRGKA IDDDLFEELE TQLLVADVGI DTTSKIISRL TDSAKRNQLK
DGEALYQLLK QQMSNILQEV SQPLEPKSED GPFVILMVGV NGVGKTTTIG KMAKQFQSQG
KKVMLAAGDT FRAAAVEQLQ VWGERNNIPV IAQKTGSDSA SVIYDALESA KARNVDVLIA
DTAGRLQNKD HLMEELKKVV RVMRKINPNA PHEVMLTLDA ATGQNAVSQT KLFNQAVGLT
GITLTKLDGT AKGGVIFALA DQFKIPIRYI GVGEGIDDLR PFASDEFVEA LFAENGVENS
AESTT
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