| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3938 |
|---|
| Symbol | |
|---|
| ID | 4175718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 4749415 |
|---|
| End bp | 4750119 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638056966 |
|---|
| Product | sugar fermentation stimulation protein |
|---|
| Protein accession | YP_663492 |
|---|
| Protein GI | 109900237 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1489] DNA-binding protein, stimulates sugar fermentation |
|---|
| TIGRFAM ID | [TIGR00230] sugar fermentation stimulation protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000378035 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTTT ATAACAGTTT GATTGAAGGG ATATTGGTTA AACGTTACAA ACGATTTTTA
ACCGACGTTA CGTTGTTAAA CGGTGAAGAG GTCGTTGCGC ACTGTCCTAA CACCGGAGCA
ATGATCGGAT GTGCTGAACC CGGGATGCAG GTTTGGCTCT CCCCAAGTAA TAACCCTAAG
CGCAAACTGG GCTATACTTG GGAGTTAGGA GTAACGCATC AAGGCCATTG GATTGGCATC
AATACCAATA ACGCAAACAA AATAGTTGCA GAGGCATTGG CAACACACGC TATTCAAGAG
TTGCAGGGAT ATGAAACCGT TCGTCCTGAA GTGCGTTTTG GGCATGAAAA CAGCAGAATT
GATTTTCTTC TAAGTAGTAG CGATAAGAAA GATTGCTATG TTGAAGTCAA ATCGGTGACC
TTATTGGAAG AGGGGCAGGG GTACTTTCCG GACGCGAAAA CGGTACGCGG TCAAAAGCAT
TTGCGTGAGC TTGCCGCTAT GGTCGAACAG GGGTATCGCG CTGTTTTACT CTTTTGTGTG
CAGCACAGTG GCATTCAAAG CGTTAAAATT GCAGAACATA TTGATCCAAA ATATGCGCAA
ATGTTTAAGC ATGCTGTTGA CGTTGGGGTA GAAGTGTTAG CTTACTCGTG TGCGATTAAC
GAACAAAATA TTACGCTAAA TCAACGACTA CCCATGATTG TATGA
|
|---|
| Protein sequence | MQFYNSLIEG ILVKRYKRFL TDVTLLNGEE VVAHCPNTGA MIGCAEPGMQ VWLSPSNNPK
RKLGYTWELG VTHQGHWIGI NTNNANKIVA EALATHAIQE LQGYETVRPE VRFGHENSRI
DFLLSSSDKK DCYVEVKSVT LLEEGQGYFP DAKTVRGQKH LRELAAMVEQ GYRAVLLFCV
QHSGIQSVKI AEHIDPKYAQ MFKHAVDVGV EVLAYSCAIN EQNITLNQRL PMIV
|
|---|
| |