| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3927 |
|---|
| Symbol | |
|---|
| ID | 4175707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4739036 |
|---|
| End bp | 4739995 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638056955 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_663481 |
|---|
| Protein GI | 109900226 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCAT TGAATATCAA AGGGCTAACC AAAGTATACA AAGGTGGAAC CCGAGCCCTT
AATGGGATTA ATTTAGAAGT AAAGCAGGGG GACTTCTTCG CCCTACTTGG CCCAAACGGC
GCCGGCAAAT CAACTACCAT TGGTATCATC AGTTCATTAG TGAACAAGAC TGGTGGCAGT
GCAGATATTT TCGAATACTC GTTAGACGCT CAACCCGTTG AAGCGAAATC ATGCATAGGC
TTGGTGCCTC AAGAGTTTAA CTTCAATCAA TTTGAGACCT TAACCCAAAT CGTGGTGAAC
CAAGCCGGCT ACTATGGTGT ACCCCGTAAC GTTGCCAAAG AGCGTGCCGA AAAATACCTA
AAACAATTGG ATTTATGGGA AAAACGTAAT CAACCCGCAC GTAATTTATC TGGTGGCATG
AAGCGCCGCT TGATGATTGC ACGGGCTCTG ATGCACGAAC CTAGAATGTT AATTTTAGAT
GAGCCTACCG CAGGGGTGGA CATCGAAATA CGCCGCTCAA TGTGGACTTT CCTAAAAGAG
ATTAACGAGC AAGGGATCAC CATCATACTC ACCACTCACT ACCTTGAAGA AGCCGAAATG
TTGTGCCGCA ACATCGCGAT TATCGATAAG GGCGTGATTG TACAAAACAC CAGTATGAAA
TCATTGCTTG CCACCTTAAA TATTGAAACA TTCATTTTTG ATTTAGCAGG AGAGCATCAG
AATATTGCAC TATCGGGCTT TGAATATCGT TTATTAGATG CCCACACGTT AGAAGTGGAT
GTGGCCAAAG AAGAAAGTTT AAACAACGTT TTTGAGCAGC TATCAAGCCA GCAAATACAA
GTATTGAGCA TGCGCAATAA GTCGAATCGC TTGGAAGAAT TGTTTGTACG CTTGGTTGAA
TCGGGCCGTG CGGAGCTAGC GAATAATGAA CAAAATAAGA AGGAGTTAGC GAATGGGTAA
|
|---|
| Protein sequence | MNALNIKGLT KVYKGGTRAL NGINLEVKQG DFFALLGPNG AGKSTTIGII SSLVNKTGGS
ADIFEYSLDA QPVEAKSCIG LVPQEFNFNQ FETLTQIVVN QAGYYGVPRN VAKERAEKYL
KQLDLWEKRN QPARNLSGGM KRRLMIARAL MHEPRMLILD EPTAGVDIEI RRSMWTFLKE
INEQGITIIL TTHYLEEAEM LCRNIAIIDK GVIVQNTSMK SLLATLNIET FIFDLAGEHQ
NIALSGFEYR LLDAHTLEVD VAKEESLNNV FEQLSSQQIQ VLSMRNKSNR LEELFVRLVE
SGRAELANNE QNKKELANG
|
|---|
| |