| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3923 |
|---|
| Symbol | |
|---|
| ID | 4175703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4735184 |
|---|
| End bp | 4735900 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638056951 |
|---|
| Product | sortase family protein |
|---|
| Protein accession | YP_663477 |
|---|
| Protein GI | 109900222 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
|---|
| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCAG GCGCTGAACT AGGCACCAAC GTGCGCGATA ACGAGGCAAA GTGGGCTGTG
TGGTTTAGCC GAGATAGTCT AAAAAGTGCT CTGTTAGGCG CGATCTGGCT CACATGCTTA
GTTGGCGGCG GGCTATTGGT TTCAAACGGT GCGTACATGT GGGCGAAGGC ACAATTTGCG
CAAGTGCTTA TCGCCAGCGC TTGGCAACGC AGCATGCATG CAGCCGAAGT TAACATCCCT
TCCCATAGCG CTAATCAAAC ACTCGAAGCG CAAGCCATAA AAACCAAACC TTGGCCATGG
GCTGATACCT ACCCTGTGGC CAAACTAACG TTACCGAGTA AGTCATTAGG CTCGTTATCG
GGAGAGCCCT TATACGTTTT AGCAGGGGCA TCAGGGCGTA CAATGGCATT TGGGCCTGGG
CATATGAGTG CGACTCCACT CCCATTTGAA GGCGGCAATA GTGTCATCAC GGGTCACAGA
GATACTCACT TCGCCGCCCT GCAATACCTG AACAAGGGAG ATTCCATAGA CGTGCAAACT
CTCGAAGCGC AAGGGCAGTA CCGTGTCACA TCGACCTTCA TTGTGCATCA AAGCCAAACT
CACATCATCG AGTCACAAGG CGCAGATCAA CTCACATTAA TCACCTGCTA CCCGTTTAAC
GCAATGACAC CCAACCCGAC GATACGCTAT GTGGTCAGTG CTGAACGCGT GCGATAA
|
|---|
| Protein sequence | MISGAELGTN VRDNEAKWAV WFSRDSLKSA LLGAIWLTCL VGGGLLVSNG AYMWAKAQFA
QVLIASAWQR SMHAAEVNIP SHSANQTLEA QAIKTKPWPW ADTYPVAKLT LPSKSLGSLS
GEPLYVLAGA SGRTMAFGPG HMSATPLPFE GGNSVITGHR DTHFAALQYL NKGDSIDVQT
LEAQGQYRVT STFIVHQSQT HIIESQGADQ LTLITCYPFN AMTPNPTIRY VVSAERVR
|
|---|
| |