| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3916 |
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| Symbol | |
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| ID | 4175696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4726066 |
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| End bp | 4726959 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056944 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_663470 |
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| Protein GI | 109900215 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAGAGC GCCATCATTT AGCCATTATC CACGCTGTTG ACAAACATGG CACATTAACC
GAAGCCGCCA ATGCCCTGCA TTTGACGCAA TCTGCTTTGA GTCACGGTAT TAAAAAGCTA
GAAGGCCACT TAGGTGCGCC TGTGTGGCAA AAAGACGGTC GTCGCTTGCG CTTAACCCAA
GCAGGGCAGG GGTTGCTCAA TTTGGCCAAC CGAGTGTTAC CGCAATTTGA ACACAGTGAA
CAAGTGATCC AGCAGATAGC TCAAGGTCAA CGCGGCGCAC TGCGCATCGG TATGGAATGC
CACCCTTGTT ATCAATGGTT ATTGAAAGTC GTCTCCCCAT TTTTGCAGCA ATATCCTGAC
GTGGACGTTG ATGTACGCCA AGCGTTTCAA TTCGGTGGGT TGGGGGCGTT GCTGGGTTAC
GATATTGATA TGCTGGTCAC CCCAGACCCA TTATTTCAAA AAGGTTTAGA GTACTTACCG
GTATTTGAAT ACGAGCACGT ATTAGTTGTG CCTGAATCGC ACCCTGTTGC GGGGCAGTCG
TGGGTGCAGC CACAGGATCT TAGTGATGAC GTGCTAATTA CCTATCCAGT AGAGGCAAGT
CGTTTGGATA TATTTAGCCA ATTTCTGACC CCAGCAGGCG CGAGCGTTAA GAGACATAGA
ACCATTGAAA CAACAGAAAT TATGTTGCAA ATGGTCAGTG CAGGGCGAGG GGTTTCGGCA
CTACCCAAAT GGCTGGTGGA ACAGCATCAA AAAGATTTAC CCATTGTGCC TGTTAGATTG
GGGAAAAAAG GAATTTTTAA AAATATTCAC TTAGGGTTTA GGGCCGGTGA AACTCGTCCT
GAATACCAGA ACACCTTTAT TGACATTGCT AAAAAAACCG ACCATTTAAT CTAG
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| Protein sequence | MLERHHLAII HAVDKHGTLT EAANALHLTQ SALSHGIKKL EGHLGAPVWQ KDGRRLRLTQ
AGQGLLNLAN RVLPQFEHSE QVIQQIAQGQ RGALRIGMEC HPCYQWLLKV VSPFLQQYPD
VDVDVRQAFQ FGGLGALLGY DIDMLVTPDP LFQKGLEYLP VFEYEHVLVV PESHPVAGQS
WVQPQDLSDD VLITYPVEAS RLDIFSQFLT PAGASVKRHR TIETTEIMLQ MVSAGRGVSA
LPKWLVEQHQ KDLPIVPVRL GKKGIFKNIH LGFRAGETRP EYQNTFIDIA KKTDHLI
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