Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3904 |
Symbol | |
ID | 4175684 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4706736 |
End bp | 4709024 |
Gene Length | 2289 bp |
Protein Length | 762 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638056932 |
Product | TonB-dependent receptor |
Protein accession | YP_663458 |
Protein GI | 109900203 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.5243 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACACACA CTCGAACATC ATTCTTAGCG CAGTCAATAA ACATGGTACT TTTCGCTAGT GCATTGGGGG CGTCAACACA TCTCGTCGCC GCTGAAGAGG AGCAAGAAAG AAAAGGTATT GAAGTCATTA ATATCACTGC CCAGAAGCGA GTCGAAAACT TACAGGAAGT TCCAATGTCA ATGACCGCTT TCTCAGCAGA AGCGATCGAA AAAAATCAGT TAACCGATAT AGGTGATATT GCTGCGGTAA CGCCGAATTT TAGCTTTTCT ACTACGGGAA GTGGCCGCCC AGAATTTACC ATTCGCGGAA TTGGTACATC AGGTGTCGTG CGAGCTGGTT TGGATAACGC GGTCAATACC TTTGTTGATG ATGTATACAT TTCGCGTTCA AGTTCTTCTA TTTTTGAATT ATTTGATTTG GAGTCAATCT CTGTTTTACG AGGCCCGCAA GGCACGCTTT TTGGTAAAAA TGTAGTTGGT GGAGCTATCA GCATTAACAC CAAGAAGCCG ACAGAAGACT TAGAAATGAA AATAAAGGGG GGAGTTGGTA GCGAGGGCCT AAGAACAGTA CAAGCCTATA TAAATGGCGG ATTAACAGAT GAGTTAGCCG GTAAATTAAC GGTTTCAACT AATCAACGCG ATGGTCTTGG ATATGATACT GCATCAGGAC AAGAATTAGC TGACCGTGAT TCTAAAAGTG TTCGGGGACA ACTCTATTTT GATAATGGTG ATTTCACGAC ATTATTTACC GCTGATTATT CTAGGGATAA AAACAACGGC CAAATTATCA GCGAGAGAGG GTTAGGTAGC CTAGCAGCGA CCGATAATGA CAGGTTTACT TCGTCCCATG GTATTCCTCA AAGCGTAGAT TCGAAGATAT ATGGCTTTTC ACTAAAAGCG GAAACTGAAA TAGACAGCGG CCTAATCACG TCTGTTAGTG CTATTCGAAA AAACTCGCTG GCAACAGTTG AGTCATTTAC TGCAGAGCAA TTAAATGTCG ACAATGGTAA TCGCACTGGC ACGCAAAAAA TACCTGGCCT TGCGGACATA TTTGATAACA GCGAAAGTTC CACTCAAATC ACACAAGAGT TTCGCTTTAC CTCTAACACC GATACTGATT TAGCTTGGGT GTCAGGAGTC TTTTTCATTA AAGAGGAAAT TAATCGTATT GAGTGTGAAG AAGTTTATGT CAACGGCACA CAACCCGTTT TCATAGGAGG CGGGGCTGCT GGCAAATCTC GTCCTTGTTG GGATAACACA AATGATACCA CTGGTTTAGC TTTTTTCTGG GATGGTAGTT ACGATCTAAC AGATAGTGTA AAGATTCGAG TGGGTGCACG ATATACGCAA GAAGAGAAAG AAAATTATAT TGAGGCGACA TACAACGAAA CATTACTTGA TCAATATGTC CCTGGTGCGG AGAACTTGCC TGACGCACAG TTAACCTTTC CTTTATCTGA GGCTTATACT GCTAAAGCCA ATAAATCATT TAGTGGTTTC ACGCCACGCT TCGTCATTGA ATGGACCCCA TCTGATGATT TATTGACATA CTTTAACGTT TCTAAAGGAT TCAAATCTGG CGGATTTGAC GGAAAAGTAA ACAGTAATAA CCTAACTGCA GAAGGTATTG GTAAAGCAGA AAGGCCTTTT GATGAAGAGA CCGCTATTAA CTATGAACTC GGTCTTAAAT CTCAATGGTT TGATGACAGG TTGAGAGTCA ATACCGCATT GTTTCAAAGT AATTTTGACG ATATGCAGCG CTTGATCATT GTTCCTGCAG GTGGTCTAGC AGTCGTGAAT GCTGCCAGTG CGACCTCAAA GGGGCTTGAA CTAGATGGGG TGGCGTTACT GACAGATGAT TGGGAGTTGA ATTTTGGATA TGGGTTTTTA AGAGCAACTT TTGATGAATT CGTTATCAAT GCTAATGACG ATCGTAGCGG GCAAGTATTA CCCAATGCTC CTAAACATAA GTTTAATTTA GGTTCTACCT ATACTCATAC CCTTGAAAAT GATGGGACTG TTACTTTCTA TGCGTCTTAC GGTTTTACGG CTAGCCAGCA TTTTAATCGC GCCCCCATCG CTAACTTAGA AACTCAAGGT GCGTACAACG TTTACAACGC CAATATTTCG TATACCACAC CAGATGAAAA TTGGAAATTT ACTCTGTGGG GCAAGAACAT TACTGATACG GAGTACAGTA ATAAGTTGGG GCAATTTATT GAGAGTACTA AAGAAAACCC AGCAGACCCT GCAACATATG GTATTTCAGT GACATACAAT TACTTTTAG
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Protein sequence | MTHTRTSFLA QSINMVLFAS ALGASTHLVA AEEEQERKGI EVINITAQKR VENLQEVPMS MTAFSAEAIE KNQLTDIGDI AAVTPNFSFS TTGSGRPEFT IRGIGTSGVV RAGLDNAVNT FVDDVYISRS SSSIFELFDL ESISVLRGPQ GTLFGKNVVG GAISINTKKP TEDLEMKIKG GVGSEGLRTV QAYINGGLTD ELAGKLTVST NQRDGLGYDT ASGQELADRD SKSVRGQLYF DNGDFTTLFT ADYSRDKNNG QIISERGLGS LAATDNDRFT SSHGIPQSVD SKIYGFSLKA ETEIDSGLIT SVSAIRKNSL ATVESFTAEQ LNVDNGNRTG TQKIPGLADI FDNSESSTQI TQEFRFTSNT DTDLAWVSGV FFIKEEINRI ECEEVYVNGT QPVFIGGGAA GKSRPCWDNT NDTTGLAFFW DGSYDLTDSV KIRVGARYTQ EEKENYIEAT YNETLLDQYV PGAENLPDAQ LTFPLSEAYT AKANKSFSGF TPRFVIEWTP SDDLLTYFNV SKGFKSGGFD GKVNSNNLTA EGIGKAERPF DEETAINYEL GLKSQWFDDR LRVNTALFQS NFDDMQRLII VPAGGLAVVN AASATSKGLE LDGVALLTDD WELNFGYGFL RATFDEFVIN ANDDRSGQVL PNAPKHKFNL GSTYTHTLEN DGTVTFYASY GFTASQHFNR APIANLETQG AYNVYNANIS YTTPDENWKF TLWGKNITDT EYSNKLGQFI ESTKENPADP ATYGISVTYN YF
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