| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3897 |
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| Symbol | |
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| ID | 4175677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4694882 |
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| End bp | 4696126 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638056925 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_663451 |
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| Protein GI | 109900196 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAAACC TTGATCCCAA TGGCATACCA GAGCTCAGCT TGCGTCAGCT GCGTTTCTTT
ATGAGTGTGT ATAAATTAAA AAGTGTGACA AAAGCAGCAA ATGAACTGAA TCGTTCTCAA
ACCGCTATCA CCAAATCGAT TACCGATTTG GAGAAGTCAT TGAATGTCAG CTTATTCGAC
CGCGTGGCTA CCGGTATGAT TGCTAACGCC TACGGAGAAG CATTTGCAAC GCGCACGCAA
CGTGCCATAG ATGAATTCCA GAAAGCAAGT CAGAGCTTTG CAAGCTACTC CAAATTGCAC
ATGAACTCTG AGAACAACCC CATATTTTCC ATGGATGTAA GTTATAAACG CTTGGCCGCA
TTCATTTCTT TATATCACTG TAAAAACGTT CACAGTGCCG CTGACCAGTT GAACGTCACT
AAAGCGGCAA TATACAGCTC TGTAAGGCAG CTTGAAGTGT GGCTGGGTAT CTTCTTATTC
GAAAGTGAAC CTCAAGGTGT CGTTCCCACA CCGTATTGCA ACGTGTTAGC GCAGCACCTA
AAACTCGCAT TTTCCGAGAT ACGTTATGCA TTGGAAGATT TGGCTAATTT AGATGGCGTT
ACCAGTGGCT CAGTTAAAAT AGGTACTTTG CCCTACACCC GCACATATCT CACTCCTCAG
GCAATTAATT TATTATTAGA TGAGCATCAT AACTTGGACG TTTCCACTCG CGAAGGTCCA
TATAATTTAC TGGAAGTTTC CTTACGAAAT GGGGACATCG ACTTCATCAT TGGGGCAATT
CGTCCATCCG AAAAAGACAG CGACTTGAAC ACCGAAATTC TGCTCGAAGA TAAATTGTCA
GTTATTGCTC GCTCAAATCA TCCATTGATG GGTCGCGAAA ATTTGTCTTT AGGGGATTTG
TCTGATTATG GCTGGGTATT GCCCGAATTA CACACACCTT CAGGTAGGCT TTTTCTTGAA
TTAATGAAAG CGCACGGGCT CCCTATTCCT ACTCATTCAA TCCATACAAG CTCGTTATCC
ATGGTTAGGG GCTTGTTAAT GGGCAGTGAC CGCGTGACCC TGCTGTCGAA ACATCAAATT
TACTATGATA GAAATCATGA ATTACTTGAC GTGCTACCAG TGGATATTGG GGAAACTTAT
CGTCCAATAG GGATCACTAT GCGCAGACGA ACAGAGCCCT CGCCTGCAGC GCAGCTATTC
CTCGACAAGC TCAGGCAAGT GGCGGACTCG GTCAACGAAC ATTGA
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| Protein sequence | MINLDPNGIP ELSLRQLRFF MSVYKLKSVT KAANELNRSQ TAITKSITDL EKSLNVSLFD
RVATGMIANA YGEAFATRTQ RAIDEFQKAS QSFASYSKLH MNSENNPIFS MDVSYKRLAA
FISLYHCKNV HSAADQLNVT KAAIYSSVRQ LEVWLGIFLF ESEPQGVVPT PYCNVLAQHL
KLAFSEIRYA LEDLANLDGV TSGSVKIGTL PYTRTYLTPQ AINLLLDEHH NLDVSTREGP
YNLLEVSLRN GDIDFIIGAI RPSEKDSDLN TEILLEDKLS VIARSNHPLM GRENLSLGDL
SDYGWVLPEL HTPSGRLFLE LMKAHGLPIP THSIHTSSLS MVRGLLMGSD RVTLLSKHQI
YYDRNHELLD VLPVDIGETY RPIGITMRRR TEPSPAAQLF LDKLRQVADS VNEH
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