| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3891 |
|---|
| Symbol | |
|---|
| ID | 4175671 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 4687629 |
|---|
| End bp | 4688831 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638056919 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_663445 |
|---|
| Protein GI | 109900190 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA ATCTTAGGCA TTTGCTTTGC GCGTTAGAAA TACAGAACTC AGGCACCATT
AGTGCAGCAG CAAAACAGAT TCATTTAACC CAATCTGCGC TGACTCAGGG TATTAATAAA
CTTGAAGCAA CTCTTGGACT AACACTTTTC AGTCGTACTA ACTCAGGTAT GTATTGTACC
GAAAACGGTG CTCGCTTCTT AAACCGAGCA GATCGCGCTT TCAAGCATTT ACAGTATGCA
GGAGCTATGT TGTTTAACGC TGATAAGCCG AAAATGCACT CCTTTGTGCG CTCAGTCAGT
AGCCGGCAGC TAAAAGCCCT CATTACCATC ACTGAATTAC AAAGCTATAC TGCTGCGGCT
ATACAGATGG GATTAACTCA GCCGACCCTG CACCGCTCTA TTAAAGATTT AGAAACCCTA
TGTGAGCAGT GCTTATTCCA GCGCTCTCCC ACCGGAGTAG AGCCCACATG GCGAGCTCGT
CAGCTAACAC GTTATGCGAG CTTATTTTTC GCTGAACTAT CTCAAGGTCT TGAAGAAATT
GGCGAGGTTA ACGGTCGCAT GAATGGTTCA ATTCGCATTG GCAGCCTCCC TTTGGCCCGC
ACTGAAATTG TGCCTCGTTG CGTTCTGCAA TTGCTAGATG AATTTCCGCT AGCGCAGGTC
AGTATCATTG ATGGGCCTTA TGAAGAACAA GTCAATTACC TATTGCATGG CCAGTTACAC
GTGATCGTCG GTGCGTTACG ATATCCCCTC CCCCATAATG ATATAAAGCA ACACAAACTA
TTTGATGATC CCTTGAGTAT GGTGGTTAAA GCGGGCCACA AATTTGCAAA GCGTGCGACC
TTGTCAAACA CAGAATTGCA AAGCCTGAAA TGGGTGGTAC CAGGAAAAGG TGTACCCGCT
CGCCTAGTAT TTGATGAATT GTTTAACAGC CGAGGCTTAG TGCCGCCCGA GCAAGTAATA
GAGTGTAGCG CCATGGTCGC TATACGTGGA TTACTGCTCA ACAGTGAAAG AGCCGCCTTA
TTGCCAGCAA GACAAGTCGA CGTCGAAGTT AAAAATGGTT TATTGGCGGT ATGCCCTATG
CCATTGGCAG ACACAAACCG CGAAATAGGC TTGAGTATGC GGAAAAATTG GCAAGCGACT
CATATTCAAC GTCGGTTCTT AGAAATCATT GAATCTCACT ATGAGCAAAC CGCTACGGTT
TGA
|
|---|
| Protein sequence | MKFNLRHLLC ALEIQNSGTI SAAAKQIHLT QSALTQGINK LEATLGLTLF SRTNSGMYCT
ENGARFLNRA DRAFKHLQYA GAMLFNADKP KMHSFVRSVS SRQLKALITI TELQSYTAAA
IQMGLTQPTL HRSIKDLETL CEQCLFQRSP TGVEPTWRAR QLTRYASLFF AELSQGLEEI
GEVNGRMNGS IRIGSLPLAR TEIVPRCVLQ LLDEFPLAQV SIIDGPYEEQ VNYLLHGQLH
VIVGALRYPL PHNDIKQHKL FDDPLSMVVK AGHKFAKRAT LSNTELQSLK WVVPGKGVPA
RLVFDELFNS RGLVPPEQVI ECSAMVAIRG LLLNSERAAL LPARQVDVEV KNGLLAVCPM
PLADTNREIG LSMRKNWQAT HIQRRFLEII ESHYEQTATV
|
|---|
| |