Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3877 |
Symbol | |
ID | 4175657 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4672182 |
End bp | 4673084 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638056905 |
Product | hypothetical protein |
Protein accession | YP_663431 |
Protein GI | 109900176 |
COG category | [R] General function prediction only |
COG ID | [COG5006] Predicted permease, DMT superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.421169 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAATTAC GCGATTTTAT CGAGCTAGTC TTGCTTGCAA GCATTTGGGG GGCCGCATTT ATTTTCACTC GCACCGCCAC GCCTGAATTT GGTCCAATAA GCTTAATCAC CATGCGAGCA AGTATTGCCA GCCTCATTTT GCTGCCATTT GTGTGCAATC GCGTCGCAAT CAGACAAATA ACCGAGCATT GGCGCGGTAT TTTAATAGTT GGGTTAACCA ATACTGCCAT ACCATTTTGT TTATTTAGCT ACAGTTTATT ACACATAGGA GCTGGATATG CTTCTGTGAT GAACGCTACA GCCCCTATGT TTGGGGCAAT GATTGGCTGG TTGTGGTTAA AGCAGCGCAT ACCTAGCGTT GCAGTACTGG GGTTGTTGAT TGGTTTTCTT GGGGTTGCAG TGCTTAGTGC TGCGCAGGCC GCCGCATTTG ACGGCATTTC CATTTTGCCC ACTTTAGCGA CTTTAGTTGC CACCGCCCTA TACGGCTATG CTGGCTGCTT TACTAAGCAA CACCTCAGCG CCGTGGGTCC AATGGCGCTA GCCGCAGGCA GTTTGTTTGC AGCAACACTG TGTCTGTTAC CACTGAATAT TTGGTTTATG CCTAGCACGC TTCCTTCGCC AAGCAGTTGG GTTGATGCCA TTGCTCTTGG TGCACTTTGC ACTGCATTAG CTTATTTGAT GTACTTCAGA TTAATCGCCA AAGTCGGCCC AAGCAATGCC CTAACCGTGG CTTACCTAAT TCCAGCCTTC GGTATTCTGT GGGGGATTGT CCTATTAAAT GAGACCTTAA CACCTTCGAT GTGGGTAGGC GTGATATTAG TTATATGCGG TGTGTTACTC GTCACCGGAG TGGCAAGCCG CGTGATAGCA AAACGTAGGT TAAAAGCCAA ACCTGCGGTG TAA
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Protein sequence | MQLRDFIELV LLASIWGAAF IFTRTATPEF GPISLITMRA SIASLILLPF VCNRVAIRQI TEHWRGILIV GLTNTAIPFC LFSYSLLHIG AGYASVMNAT APMFGAMIGW LWLKQRIPSV AVLGLLIGFL GVAVLSAAQA AAFDGISILP TLATLVATAL YGYAGCFTKQ HLSAVGPMAL AAGSLFAATL CLLPLNIWFM PSTLPSPSSW VDAIALGALC TALAYLMYFR LIAKVGPSNA LTVAYLIPAF GILWGIVLLN ETLTPSMWVG VILVICGVLL VTGVASRVIA KRRLKAKPAV
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