| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3875 |
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| Symbol | |
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| ID | 4175655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4670287 |
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| End bp | 4671660 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638056903 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_663429 |
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| Protein GI | 109900174 |
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| COG category | [F] Nucleotide transport and metabolism
[L] Replication, recombination and repair |
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| COG ID | [COG0122] 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase
[COG2169] Adenosine deaminase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.740536 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGACGA TACAAGATTA TCAACAAGCG AGACTTACCC GCGATCCTCG TTTCGATGGG
CGTTTTTTTA TTGCGGTCAA ATCGACAGGG ATTTTTTGCC GGCCGATTTG CCCAGCAAAG
CTACCACATG AAGAAAACGT CGAATACTAC ACCTTAGCAC AGCAGGCCAT GCTTGCGGGA
TATCGCCCCT GTTTACGCTG TCGTCCAGAC AGTGCGCCGC ATTCCCACGC ATGGAACGGA
GTTGATACTA CGGTCAATCG AGCGCTACGG ATACTTGGCG AAAACCTACA CCTAAGTATG
ACCGCAATTG CAGAAAAACT CGGTATAAGC GACCGCTATT TACGCCAACT TTTTATTCAA
CACATTGGTC TTAGCCCGAA ACAATATCAA GTCTATGAAC AAATTCTGTT TGCCAAACAA
TTATTGCAGC ACACCCAATT GCCTATCGAA CATGTTGCGG ATGCCGCGGG CTTTAAAGAC
GCCAGACGCT TACAATATAA TATGCAACGC GTCATGCACC GTACTCCAAA GGAATTACGT
ATAAAACCCA GTAACCTGAT ACAACCTATC GTTATTCCTT TAGCCTACCG CCCGCCGTAC
AACTGGCCCC ACTTGCGTGA CTTTCTGGCG CGCCGAGCAA TATCAGGTAG CGAATGGGTG
AGCCAAGATA GTTACGCACG TAATTTTACC TTCGGAACCA GCAAAGGTTA TTTTCAGGCC
CAGCATCAAC CAGATAAATA CCGCTTTCTC GTTACCTTAG CAATTGATGA TTTGCGGCAA
CTCAAGCACT GTTTGAGTAA CGTTCGGCGC ATATTGGATG TTGATGCGGA TAGCGCGACG
ATTGACAACA GAATCGAATT AAGTGGCTTA TCCAAACAAA CCATTACCCC TGGTATCCGC
ATTCCCGGTA TATGGAATAC CTTTGAAGCT GGGTGTAGAG CTATTCTTGG TCAGCAAATA
TCAGTGACCG CGGCTATTAA TCTTGTCACT AAGCTCGTGG CAACGATCGG AGAGCCTGTT
CTTGATGATC AGGCGCCAGT GCCTGAACTT AATCGTTATT TTCCGGCGCC TGATGCAGTT
GCAAACAGTG ACCTCAGTTT TTTAGGCATG CCCAACAGTC GTCGTGAGAC CCTGCGCCGT
TTTGCTGCTT TTTATGCTCA GCACCCTGAT ACTCCACCCG ATGATTGGTT ATCAATTAAA
GGCATTGGTC CATGGACAGT TGCTTATGCT AATTTGCGAG GGTTATCCCA AGCGGATATT
TGGCTTAACT CAGATTTAGT CATCAAAAAA CAGCTACTTT TACATGACAT AGATGCTGAC
AAAGTCAGCC CTTGGCGTAG TTATTTAACA TTTACTTTAT GGAGTCTCGC GTAA
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| Protein sequence | MLTIQDYQQA RLTRDPRFDG RFFIAVKSTG IFCRPICPAK LPHEENVEYY TLAQQAMLAG
YRPCLRCRPD SAPHSHAWNG VDTTVNRALR ILGENLHLSM TAIAEKLGIS DRYLRQLFIQ
HIGLSPKQYQ VYEQILFAKQ LLQHTQLPIE HVADAAGFKD ARRLQYNMQR VMHRTPKELR
IKPSNLIQPI VIPLAYRPPY NWPHLRDFLA RRAISGSEWV SQDSYARNFT FGTSKGYFQA
QHQPDKYRFL VTLAIDDLRQ LKHCLSNVRR ILDVDADSAT IDNRIELSGL SKQTITPGIR
IPGIWNTFEA GCRAILGQQI SVTAAINLVT KLVATIGEPV LDDQAPVPEL NRYFPAPDAV
ANSDLSFLGM PNSRRETLRR FAAFYAQHPD TPPDDWLSIK GIGPWTVAYA NLRGLSQADI
WLNSDLVIKK QLLLHDIDAD KVSPWRSYLT FTLWSLA
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