| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3873 |
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| Symbol | |
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| ID | 4175653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4666842 |
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| End bp | 4668770 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638056901 |
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| Product | arginine decarboxylase |
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| Protein accession | YP_663427 |
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| Protein GI | 109900172 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
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| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTAATGG CAGAGCAAGC AGATTGGACA ATCGACGATG CGGAGCGCGT ATATGGCGTT
AAACGTTGGG GTGCTGGTTA CTTCGAAATC GGATCAAACG GCAATCTTAA GATCACTCCA
GATCTTTCAA ATAAAAATAT GCGTATCGAC TTCCAATCCG TCATCGAAGA AATTAAAGAA
GAAGGCATTC AATTTCCCGT TGTTGTGCGC TTTCACGATA TTTTACGCTC TCAGGTTGCG
TGCTTAAATC AAACCTTCAT CAACACCATC GAAGAAGCCC AGTATCAGGG CAAGTACATG
GGTGTTTATC CGGTTAAAGT AAACCAGATG CGCGAAGTGG TTGAAGAAAT AGTAGACGCT
GGCGCTCCGT TTAACTATGG CCTAGAAGCA GGCTCTAAAG CCGAGCTTAT TACGGTTATG
GCTTACAATA CCAATATCGA CTCGTTGACG ATCTTAAACG GATATAAAGA CGCCGAGTTT
ATGCGTTTAG CCTTGTTAGG TCGCAAACTT GGCCGCAAGA TGATAGTGGT GATTGAGAAA
TACTCAGAGC TAAGCCTGCT TGTGAACGCC GCTAAACAAT TAGATGTGAT GCCTATCATT
GGCCTTCGAT CAAAAATGAC TGTAAAAGGC CGTGGCAAAT GGGAAAGTTC AGGCGGTGAC
CGTGCTAAAT TCGGCCTCAC TACCAGCGAA ATGATTTGCG CCGCTCGCTA TCTAGAAAGC
GAGGGCATGG GCGAATGTTT GAAATTACTG CATTTCCATA TTGGTAGCCA ATTAACTGAC
ATCCGCGCAG TCAAAGAGGC CATCAGTGAA GGCGGTCGTA TTTACGCAGA ATTACACCGC
ATGGGCTTTA AATTAGAGTA CGTTGATGTG GGCGGCGGTT TAGGTATCGA TTACGACGGC
AGCAAATCAA CTAATGACTC ATCACGTAAC TACACCATGG AAGAATACGT AGCCGATGTC
GTTTACGGTA TGCGTGAAGT GTGTGACTTA GAAGGCGTTC CTCACCCTAC GCTTGTTAGC
GAAAGTGGCC GTGCTATTAC CGCTCACCAT AGCTGCGTTG TGGCGCAAGT TGTTGGTGAA
ATTCGCGCAA ATAGCGCCGA GCTTCCCACA GATAAATTGC CCAACGATCA CGTTTTATTG
AATAACATTC GCGAATTGGC TGAAAGTGTT GACTCGCAAG ACAACCTTCA AGAAATTTTC
AATGATGCAT CTCAATGGAA AGAGCACGCA ATTAACGCAT TTAAACTGCG CGTTATTTCA
TTAGAAGAAT TAGGCAAAAT TGAAACTTTG TATTGGCAGA TTATGGTCAA ATTGCAGCAT
CGCCTGAAAG ATGCTGAGTT TGTACCAGAA GAATTACAAG AACTTGACTA CAACTTGTCG
TCACAATACT TGTGTAATTT CTCTGTTTTC CAATCCGCAG CTGACACGTG GGCGATAGAC
CAAGTATTAC CGGTCGTACC CATTGCTCGC ATGAACGAGA AACCCACCGT GAATTGTTCA
CTCGTCGACA TCACCTGTGA TAGTGACGGT AAGCTTGACC AATTCGTGGT CGAGCACGGT
ATCTCAGACG TGCTACCGAT GCCGCCGCTT AAAAAAGGGG AAGAGTATTA CTTAGGGTTG
TTCCTCACCG GCGCATATCA AGATGTAATG GGCGACATGC ATAATTTGTT CGGCCGGTTG
AACGAAGTGC ATATTTTTGG TGATGATGAT GACCCAGAAG ACTTCTACAT TGAAGAAATG
GTTAAAGGCT CATCTGTACA AGACGTATTA TCTATTATGC AGTACAACCC AGATGCAATG
GCCCAATCGG TTAAACGTAT GATTGACCAG CATATTTCAA GTGGCGCAAT GAAGCCCCGC
GAAGCGGTAA AATGGACTGA CTTTTACGAA GATTGCTTAA AAGGTTATAC CTATTTAAAA
ACCAATTAA
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| Protein sequence | MVMAEQADWT IDDAERVYGV KRWGAGYFEI GSNGNLKITP DLSNKNMRID FQSVIEEIKE
EGIQFPVVVR FHDILRSQVA CLNQTFINTI EEAQYQGKYM GVYPVKVNQM REVVEEIVDA
GAPFNYGLEA GSKAELITVM AYNTNIDSLT ILNGYKDAEF MRLALLGRKL GRKMIVVIEK
YSELSLLVNA AKQLDVMPII GLRSKMTVKG RGKWESSGGD RAKFGLTTSE MICAARYLES
EGMGECLKLL HFHIGSQLTD IRAVKEAISE GGRIYAELHR MGFKLEYVDV GGGLGIDYDG
SKSTNDSSRN YTMEEYVADV VYGMREVCDL EGVPHPTLVS ESGRAITAHH SCVVAQVVGE
IRANSAELPT DKLPNDHVLL NNIRELAESV DSQDNLQEIF NDASQWKEHA INAFKLRVIS
LEELGKIETL YWQIMVKLQH RLKDAEFVPE ELQELDYNLS SQYLCNFSVF QSAADTWAID
QVLPVVPIAR MNEKPTVNCS LVDITCDSDG KLDQFVVEHG ISDVLPMPPL KKGEEYYLGL
FLTGAYQDVM GDMHNLFGRL NEVHIFGDDD DPEDFYIEEM VKGSSVQDVL SIMQYNPDAM
AQSVKRMIDQ HISSGAMKPR EAVKWTDFYE DCLKGYTYLK TN
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