Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3872 |
Symbol | |
ID | 4175652 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4664747 |
End bp | 4666309 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638056900 |
Product | Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase |
Protein accession | YP_663426 |
Protein GI | 109900171 |
COG category | [R] General function prediction only |
COG ID | [COG0388] Predicted amidohydrolase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00254916 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCACGACA ATAATTGCTC AACTCCCTCG ATGGATGATC CAGAACATAT TTTGGAATTG CGCCATTTAA CCATAGATGA TTATGCCGAC GTAAAAGAGC TTATGGACAT CGTCTATTCT CAAGTTGGTG GGGCCTGGCC TTTGAAAAAT TTTCAATCGC AGTTGAATGT TTTTCCTGAA GGGCAAATCT GTATAGAAGA TAAAGGCAAG GTTGTCGCTG CCGCCATTTC AGTGATAATC GATTACGATA AATTTGGTGA TAAACATACC TATGAAGACA TTACCGGTGA CGCATATATG TCTACCCACG ATCCAAAGGG TGATGTGCTT TATGGCGTAG ACCTTTTTGT GTCTCCTGAG TATCGAGGCT TGCGATTAGG GCGACGCTTG TATGAAGCAC GCAAAGAAGT GTGCCGGAAT CTAAACTTAA AATCGATTGT GGCTGGTGGG CGGATTCCTA ACTACACCAA GTATGCAGCG CAGATGTCAC CATATGAATA TGTTGAGTTA GTCAAATCAA AAGACATTCA CGATCCAATT TTAACCTTCC AATTGTCCAA TGGCTTCGAA GTAAAACAAT TACTTAAAGC GTATTTCCCT GAGGATAAAG CGTCTCGTGG TTACGCTACG CTGCTTCAAT GGCACAATAT TTACTATGAC CCTGAAGAGC CTGAGTTGTT GGGTAGCCAG CGCAACTCAG CGCGTATCGG ATGTATTCAA TGGCAAATGC GTTATTTCAA TGATGTGCCA GAGTTGCTCC AGCAAGTTGA ATATTTCGTG GATGCCTTGT CAGATTACAA ATGTGACGTC GCACTTTTTC CTGAATTTTT TAACGCACCA TTAATGGGGA TTAAGCAGGC TGATACATCT ATCGATGCGA TTTGGAATTT AGCCACTTAC ACGGATGAAA TCCTCACCGA AATTTCACGT TTAGCTGTCT CGTATAATAT AAATGTTATT GCCGGGTCGG TGCCGGTTAT CGAAGAAAAT GAACTGTATA ATGTGAGCTA TTTTTGCCAC CGAGATGGGC GTGTTGAAAG CCAATATAAA TTGCATCCGA CACCACATGA GAAAAAAGAT TGGATCATGC AAGGGGGGAA TCAATTACAA GCATTCGATA CTGATTTTGG TAAAGTCGGC ATTCTGATTT GTTACGATGT TGAGTTCCCT GAATTGGGCC GTTTATTGGC AGAGCAAGAT ATTCAAATCT TATTCGTTCC GTTTTGGACT GACACCAAAA ATGGCTACCT GCGTGTACGT CGTTGCTCTC AAGCTAGGGC GATAGAAAAC GAATGTTACG TAGCAATTGC GGGCAGTGTG GGTAACCTTC CTAAGGTTGA TAACGTGGAC ATTCAATACG GTCAAACCGC TGTGTTTTCC CCATCGGATT TCGCATTTCC CCATGATGCA ATAGTGTCAG AAACGACGCC GAATACTGAA ATGACGCTGA TCGTTGACTT AGATTTTGAT AAGTTAAAAC AACTTAAAAA TGAAGGGTCT GTGAGAAACT ACTTAGATCG CCGCCGAGAC TTATATGAAG TGAAGTGGAA GGGCCCGAAG TAA
|
Protein sequence | MHDNNCSTPS MDDPEHILEL RHLTIDDYAD VKELMDIVYS QVGGAWPLKN FQSQLNVFPE GQICIEDKGK VVAAAISVII DYDKFGDKHT YEDITGDAYM STHDPKGDVL YGVDLFVSPE YRGLRLGRRL YEARKEVCRN LNLKSIVAGG RIPNYTKYAA QMSPYEYVEL VKSKDIHDPI LTFQLSNGFE VKQLLKAYFP EDKASRGYAT LLQWHNIYYD PEEPELLGSQ RNSARIGCIQ WQMRYFNDVP ELLQQVEYFV DALSDYKCDV ALFPEFFNAP LMGIKQADTS IDAIWNLATY TDEILTEISR LAVSYNINVI AGSVPVIEEN ELYNVSYFCH RDGRVESQYK LHPTPHEKKD WIMQGGNQLQ AFDTDFGKVG ILICYDVEFP ELGRLLAEQD IQILFVPFWT DTKNGYLRVR RCSQARAIEN ECYVAIAGSV GNLPKVDNVD IQYGQTAVFS PSDFAFPHDA IVSETTPNTE MTLIVDLDFD KLKQLKNEGS VRNYLDRRRD LYEVKWKGPK
|
| |