| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3864 |
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| Symbol | |
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| ID | 4175644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4658897 |
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| End bp | 4659880 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638056892 |
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| Product | RNA polymerase, sigma 28 subunit |
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| Protein accession | YP_663418 |
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| Protein GI | 109900163 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.404406 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTCATC AAAATAGCGC TACCATAGAG TTAGATTTAG TCGACGACAT TGAAGAAGCC
GTAGAAAAAG AATTAGTAAA GGCAGAGAAA GATTCTGAAG ATAAATTCAA AGATATCGTC
TCTAGCAAAG AAGCCCCTAG TAAAAATCTC GATGCCACCC AATTATATTT AGGCGAAATA
GGCTTTTCCC CCCTGCTGTC TGCAGAAGAA GAAGTGTATT TTTCGCGCCG AGCCCTAAAA
GGCGATGAAG CCTCACGACA ACGCATGATC GTCAGTAACT TACGATTAGT GGTAAAGATC
GCGCGACGTT ATAACAACAG AGGTTTGGCC TTACTTGACT TAGTCGAAGA AGGTAATCTC
GGCCTTATCC GCGCAGTTGA AAAGTTTGAT CCTGAACGAG GATTTCGTTT TTCTACCTAT
GCGACGTGGT GGATACGCCA GACGATTGAA CGGGCTATTA TGAATCAAAC CCGCACAATT
CGCTTACCTA TACATGTCGT AAAAGAACTT AACGTATACC TTCGTACCTC ACGCGAATTG
GCGCAGAAGT TAGATCATGA ACCCACCGCA GAGGAAATAG CTGAGGCGGT TCAAAAACCC
GTTGCAGATG TCACTAAGAT GCTGCGTTTA AATGAGCGTA TTACCTCGGT CGATACACCC
ATCGGCAGTG AGAACGACAA CGTTTTACTG GATATCATTG CTGACGATAA CGGTCACGAT
CCTGAAGAAG ATTTGCAAGA CAAAAACGTC AAATTAAGTA TCGTTGGCTG GTTAGAAGAT
TTAAATCCTA AACAAAGAGA AGTATTAGCC AGACGATTTG GGCTGTTAGG GTACGAACCT
TCAACACTAG AGGATGTTGG CGTAGAAATA GGGTTAACAC GTGAGCGGGT TCGCCAAATT
CAGGTAGAAG CTCTGCGAAG ACTCAAGGAT ATGCTTGGTC ACAAGGGATT AAACTTGGAA
TCATTGTTTA ATCAATTAGC TTAA
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| Protein sequence | MSHQNSATIE LDLVDDIEEA VEKELVKAEK DSEDKFKDIV SSKEAPSKNL DATQLYLGEI
GFSPLLSAEE EVYFSRRALK GDEASRQRMI VSNLRLVVKI ARRYNNRGLA LLDLVEEGNL
GLIRAVEKFD PERGFRFSTY ATWWIRQTIE RAIMNQTRTI RLPIHVVKEL NVYLRTSREL
AQKLDHEPTA EEIAEAVQKP VADVTKMLRL NERITSVDTP IGSENDNVLL DIIADDNGHD
PEEDLQDKNV KLSIVGWLED LNPKQREVLA RRFGLLGYEP STLEDVGVEI GLTRERVRQI
QVEALRRLKD MLGHKGLNLE SLFNQLA
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