Gene Patl_3863 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_3863 
Symbol 
ID4175643 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand
Start bp4658013 
End bp4658831 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content42% 
IMG OID638056891 
Productpeptidase M23B 
Protein accessionYP_663417 
Protein GI109900162 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0739] Membrane proteins related to metalloendopeptidases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.826682 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAT CGTCTGGTTT GCTTATTTTT TCTTTTTGCA TTTGTCTTGC GGCTTGTTCA 
AGTCGCAAAG CGCCTGCGCC TATTGTTGAG ATTTATCAAG GCAAAACCTT TCGGGATGTT
AAAAAGTCGT CCTATAATGC TCATTCTTAC ACAGTGGAAA AGGGCGATAC GCTCTACACC
ATTTCCTGGA AAAGTGGACA AGATTATCGA GATATTGCAA AATTAAACGG TATTCGACCT
CCGTATAATA TCTTCCCAGG CCAACGTTTA ACGCTCAAAA AATCATCAGG GTCAATAGTT
AAAAGGTCTA ACAATGGCAC TGGTCTGAGT TCAAATTCAA AATCAAATCA AGTAGTTGAC
CCCCCAAAAA AGCAGGCGTA TGGTAAATCT AACGCCACTG TTACAAAAGA GGTAACTACC
TCTTCCGGCA GTGAGTTTCC AAGTAAAATC GCAGCATGGC TATGGCCAAC TAAAAACACC
GTTACACGTG GTTTTTCTAA CACAGAACAC GGCAATAAAG GCTTAGATTT TAACGGAAAC
TTAGGTTCAC CTATTTTGGC GACCGCTGCT GGCAAAGTTG TTTACACAGG GGATGCCCTG
CGTGGATATG GAAAGCTCGT TATAGTGAAA CACTCAGATT CATTTTTGAG CGCTTATGCC
CATAACGATA GTATTCTAGT GAAAGAGCAA CAGTGGGTTA GAGCAGGTCA AAAAATTGCG
ACTATGGGAA AAAGTGGTTC CGACACAGTT AAACTTCATT TTGAAGTGCG CTACAAGGGC
CAGTCTATAG ACCCGCTACG CTATCTGCCT AAACGATAA
 
Protein sequence
MKKSSGLLIF SFCICLAACS SRKAPAPIVE IYQGKTFRDV KKSSYNAHSY TVEKGDTLYT 
ISWKSGQDYR DIAKLNGIRP PYNIFPGQRL TLKKSSGSIV KRSNNGTGLS SNSKSNQVVD
PPKKQAYGKS NATVTKEVTT SSGSEFPSKI AAWLWPTKNT VTRGFSNTEH GNKGLDFNGN
LGSPILATAA GKVVYTGDAL RGYGKLVIVK HSDSFLSAYA HNDSILVKEQ QWVRAGQKIA
TMGKSGSDTV KLHFEVRYKG QSIDPLRYLP KR