| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3859 |
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| Symbol | |
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| ID | 4175639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 4654399 |
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| End bp | 4655451 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056887 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_663413 |
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| Protein GI | 109900158 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.629248 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAATTA ACCATTGGCA GTACCTAAGT AGCAAGCCCG AATCAACTGG CATATTCAAA
CAGCAACCTG ATGATTTTGT GGTGCAAGAA ATTCTCGGTT ATGAGCCTGT CGGGGAAGGC
GAACATATTT ATCTGTGGGT ACGAAAAGAA GGCTTAAATA CCGCTTATTT GGCGGAGCAG
ATCGCTAAGT TTGCGCAGCT ACCATTGCGC GCGGTTACCT ACGCTGGGCG CAAAGACAAA
CACTCAGTTA GCGAGCAATG GTTTGGTGTG CACAAACCCG GTAAAGCAGA ATATGATTGG
TCGGCGCTTA ATGTACCGGG TGCCACCGTA CTCAAAGCTA TTCGTCACAA TAAAAAGCTA
CGAACTGGTG TATTAAAAGG TAATAAGTTT ACTATTTTGA TGCGCGACGT TACCCCCAGC
GACGACTTAG CACAACGCAT TGCGCAAGTG AGCCTGTCAG GTGCCCCTAA TTACTATGGC
CCCCAAAGAT TTGGTGATAG CCGCTATGAT CCCAAGGGCA GTAATTTGAT GCTTGCTGAA
AAAATGATTA ACGGTGAAGT TATTCGCAAC CGTAATAAGC GCTCAATGGC TATCTCGGCA
TTACGTTCTT GGTTATTTAA CGAGGTACTG AGCGAACGTA TCAATGCAGG GGATTTTGCC
CAGCCCTTAG AAGGCGATGT AATGTCTTTA GCGGGCAACG CAAGCTATTT TGTTAGCGAT
GATATCGACG ATACCATCAA GCAACGCTTA GCCACACGAG ACATAACCAT ATCTGCACCT
TTGTGGGGTA AAGGCGAGCT TGCGTCCACC GGCTCAGCAT TAGCATTTGA AAAAAGCGTT
GTCATGAACC ACCCCAAGAT AACGAAAACG TTAGCCAGTC TAGGCTTGGA GCAAGAAAGA
CGTCCTATTG TTTTATACCC AAGCAACCTG ACATGGGCGT GGGAGCAAAA TAATCTGCGC
ATTGCGTTTG AATTACCCGC CGGCACATTT GCCACGTCAG TTTTGCGAGA AATTTTAAAT
GTCGAATCTG TCGATACGGG GCCCAGCGAA TGA
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| Protein sequence | MQINHWQYLS SKPESTGIFK QQPDDFVVQE ILGYEPVGEG EHIYLWVRKE GLNTAYLAEQ
IAKFAQLPLR AVTYAGRKDK HSVSEQWFGV HKPGKAEYDW SALNVPGATV LKAIRHNKKL
RTGVLKGNKF TILMRDVTPS DDLAQRIAQV SLSGAPNYYG PQRFGDSRYD PKGSNLMLAE
KMINGEVIRN RNKRSMAISA LRSWLFNEVL SERINAGDFA QPLEGDVMSL AGNASYFVSD
DIDDTIKQRL ATRDITISAP LWGKGELAST GSALAFEKSV VMNHPKITKT LASLGLEQER
RPIVLYPSNL TWAWEQNNLR IAFELPAGTF ATSVLREILN VESVDTGPSE
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