Gene Patl_3858 details

Gene Information

• Locus tag: Patl_3858
• Symbol: ispF
• ID: 4175638
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudoalteromonas atlantica T6c
• Kingdom: Bacteria
• Replicon accession: NC_008228
• Strand: +
• Start bp: 4653906
• End bp: 4654394
• Gene Length: 489 bp
• Protein Length: 162 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 638056886
• Product: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• Protein accession: YP_663412
• Protein GI: 109900157
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
• TIGRFAM ID: [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.178729
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTTAC GTATAGGTCA CGGTTACGAC GTGCATAAAT TTGGTGATAG CGGCCCCATC 
ACGATTTGCG GTGTGAAGAT TGATTACGAG CAAGGCTTAC TGGCTCACTC TGACGGAGAC 
GTCGCCCTAC ACGCGCTATG TGATGCACTG TTGGGCGCGT TAGCCTTAGG CGATATTGGT 
GGTCACTTCC CCGATACTGA TGCACAGTTT AAAGGTGCAG ATAGCCGTGC ATTATTACGC 
CACGTAATGA CGCTCGTTAA TGAGCATGGT TACGAGATAG GCAACCTTGA TTTAACCATA 
GTCGCTCAAG CGCCCAAAAT GGCGCCGCAT ATTCAAGCCA TGCGTGAAAA CATCCGCCAA 
GACGTAAACG CGCAATTAAA CCAAGTGAAT GTAAAAGCCA CTACCACTGA AAAGCTTGGC 
TTTGCCGGGC GAAAAGAAGG GATCGCGTGC TATGCGGTGG TGCTATTGAA CAAAAGCATA 
GCGGCATAA 

 

Protein sequence

MNLRIGHGYD VHKFGDSGPI TICGVKIDYE QGLLAHSDGD VALHALCDAL LGALALGDIG 
GHFPDTDAQF KGADSRALLR HVMTLVNEHG YEIGNLDLTI VAQAPKMAPH IQAMRENIRQ 
DVNAQLNQVN VKATTTEKLG FAGRKEGIAC YAVVLLNKSI AA