Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3848 |
Symbol | |
ID | 4175628 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 4643516 |
End bp | 4644202 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638056876 |
Product | DNA mismatch repair protein |
Protein accession | YP_663402 |
Protein GI | 109900147 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG3066] DNA mismatch repair protein |
TIGRFAM ID | [TIGR02248] DNA mismatch repair endonuclease MutH |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.662475 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTCTAATA ATCCATCACA AATTAAAGCC CCACCAAACA GTATTGACGA ATTGCTTGAA CGCGCTGGAT CACTGGCAGG GCTGACCTTA GGCGAGTTAG CACAAAGCAA GAATATTCGT GTTCCCAACG ATTTTAAGCG TGAAAAAGGC TGGAGTGGTC AGCTACTTGA GCTGGCTCTA GGTGCCGAAG CGGGCTCAAA AGCGCAGCAA GATTTTGCCA GTATAGGCGT TGAACTCAAA ACCATCCCCA TTGACGTAAA CGGGTATCCT CTTGAAACGA CTTATGTTTG TTATGCGCAT TTAGTTGATG TGGCAGGTAT TCACTGGGCC ACCAGTAGCG TGCGCAATAA GCTAAATAAA GTCTTGTGGG TTCCCATAGA TGGCAGGCGC GACATCCCCC CAAGCGAGCG CGTTATAGGC ACACCATTTT TATGGTCCCT ACAAGGTCAA CAAGAAGCGT ATTTGCGCCA AGATTGGGAG GAAATAATGG ACATGATTGC CATGGGGGAC ATTGAAAAGG TAACCGCGCG CTATGGTGAG TATATGCAGT TACGCCCTAA AGCTGCGAAC GGCAGCGTCT TAACCGATGC TATAGGGAAA AATGGCCAAA TCATTCAAAC TCGCCCTAGA GGATTCTATT TAAGAAAAGA ATTCACCCGT AAAATTTTAC ATGACTACTT CTCGTGA
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Protein sequence | MSNNPSQIKA PPNSIDELLE RAGSLAGLTL GELAQSKNIR VPNDFKREKG WSGQLLELAL GAEAGSKAQQ DFASIGVELK TIPIDVNGYP LETTYVCYAH LVDVAGIHWA TSSVRNKLNK VLWVPIDGRR DIPPSERVIG TPFLWSLQGQ QEAYLRQDWE EIMDMIAMGD IEKVTARYGE YMQLRPKAAN GSVLTDAIGK NGQIIQTRPR GFYLRKEFTR KILHDYFS
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