| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_3842 |
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| Symbol | |
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| ID | 4175622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 4637381 |
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| End bp | 4638163 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638056870 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_663396 |
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| Protein GI | 109900141 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0083213 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAGATA ATTTATTTTC AATGCAAGGC AAGGTATGCG TTGTCACCGG TGGCTCACGG
GGTTTAGGGG CTTTTATGGC GCAGGGCTTT TTAGAAGCAG GTGCTAAACG GGTGTATATT
ACTGCGCGTA AAGCACAAGC GTGTTTAGAT GCCGCCGAAG AGCTTAGACA ATTTGGCGAC
TGTGTGGCAC TCGTGGGTGA TGTTGCAACC AGCGAAGGTG TGATGGATTT GGTCAAGCAG
CTAAATGACC GCGAGCAGCA TATTGATGTG TTGGTGAACA ATGCAGGCAC GGCTTGGGGG
GCACCATTTG GCCAATTCCC TGAAAAGGGC TGGGACAAGG TGATGGATTT AAACGTGAAA
AGCCCATTCT TTTTAACCCA AGCGTTAACG CCATTGCTTG AAAAGAATGC GAGCAAGGAC
AATACGTCTG CCGTGATTAA TATCGGCTCT ATCGCGGGGA TTGTAGGCAA CGGGCTTGAT
AATTACAGCT ATGCTGTTTC TAAATCTGCA ATTCATCAGC TAACCCGGGT TTTAGCCAAA
GAATTAGTTG ATAAACATAT TCGAGTAAAC GCCATCGCAC CTGGTCGTTT CTATTCAAAA
ATGACCGAAT TTCTGAGTGA AGATAAAGAA GCGTTTGAAG AAGAACTCCA GTCTATACCT
ATGCGTCGCT GGGGCGAAGC ATCTGATATT GCTGGTGTCG CTTTGATGTT AGCAAGCAAA
GCGGGTGGCT TCATGACGGG ACAAATACTG CCCGTAGACG GAGGCACAAC GTTAGTCAAT
TAA
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| Protein sequence | MLDNLFSMQG KVCVVTGGSR GLGAFMAQGF LEAGAKRVYI TARKAQACLD AAEELRQFGD
CVALVGDVAT SEGVMDLVKQ LNDREQHIDV LVNNAGTAWG APFGQFPEKG WDKVMDLNVK
SPFFLTQALT PLLEKNASKD NTSAVINIGS IAGIVGNGLD NYSYAVSKSA IHQLTRVLAK
ELVDKHIRVN AIAPGRFYSK MTEFLSEDKE AFEEELQSIP MRRWGEASDI AGVALMLASK
AGGFMTGQIL PVDGGTTLVN
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